Solyc06g073300.1.1

Description : component RPL27 of LSU proteome component

Gene families : OG0002403 (Archaeplastida) Phylogenetic Tree(s): OG0002403_tree ,
OG_05_0002938 (LandPlants) Phylogenetic Tree(s): OG_05_0002938_tree ,
OG_06_0003422 (SeedPlants) Phylogenetic Tree(s): OG_06_0003422_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g073300.1.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00032p00176990	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
AMTR_s00045p00086530	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	Archaeplastida
AT3G22230	No alias	Ribosomal L27e protein family	0.32	Archaeplastida
AT4G15000	No alias	Ribosomal L27e protein family	0.36	Archaeplastida
Cpa\|evm.model.tig00021275.23	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.23	Archaeplastida
Cre17.g701650	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.37	Archaeplastida
GSVIVT01012080001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.18	Archaeplastida
GSVIVT01020410001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
Gb_36674	No alias	component RPL27 of LSU proteome component	0.22	Archaeplastida
LOC_Os02g18380.1	No alias	component RPL27 of LSU proteome component	0.09	Archaeplastida
LOC_Os10g41470.1	No alias	component RPL27 of LSU proteome component	0.12	Archaeplastida
MA_10034g0010	No alias	component RPL27 of LSU proteome component	0.03	Archaeplastida
MA_3390g0010	No alias	component RPL27 of LSU proteome component	0.17	Archaeplastida
Mp4g23910.1	No alias	component RPL27 of LSU proteome component	0.32	Archaeplastida
Pp3c15_4610V3.1	No alias	Ribosomal L27e protein family	0.38	Archaeplastida
Pp3c23_21640V3.1	No alias	Ribosomal L27e protein family	0.02	Archaeplastida
Pp3c24_20290V3.1	No alias	Ribosomal L27e protein family	0.31	Archaeplastida
Pp3c8_24410V3.1	No alias	Ribosomal L27e protein family	0.3	Archaeplastida
Smo166700	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
CC	GO:0000786	nucleosome	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0032993	protein-DNA complex	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001141	Ribosomal_L27e	52	135

External Links

No external refs found!

Solyc06g073300.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation