Solyc06g073310.3.1

Description : component RPL9 of LSU proteome component

Gene families : OG0002651 (Archaeplastida) Phylogenetic Tree(s): OG0002651_tree ,
OG_05_0002585 (LandPlants) Phylogenetic Tree(s): OG_05_0002585_tree ,
OG_06_0002821 (SeedPlants) Phylogenetic Tree(s): OG_06_0002821_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc06g073310.3.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00018p00131950	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.24	Archaeplastida
AMTR_s00048p00062300	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	Archaeplastida
AT1G33120	No alias	Ribosomal protein L6 family	0.35	Archaeplastida
AT1G33140	PGY2	Ribosomal protein L6 family	0.41	Archaeplastida
AT4G10450	No alias	Ribosomal protein L6 family	0.15	Archaeplastida
Cpa\|evm.model.tig00001532.12	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.4	Archaeplastida
Cre12.g494050	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.38	Archaeplastida
GSVIVT01016795001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.26	Archaeplastida
GSVIVT01038670001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.14	Archaeplastida
Gb_36692	No alias	component RPL9 of LSU proteome component	0.02	Archaeplastida
LOC_Os02g01332.1	No alias	component RPL9 of LSU proteome component	0.17	Archaeplastida
LOC_Os09g31180.1	No alias	component RPL9 of LSU proteome component	0.42	Archaeplastida
MA_38141g0010	No alias	component RPL9 of LSU proteome component	0.14	Archaeplastida
Mp4g24070.1	No alias	component RPL9 of LSU proteome component	0.48	Archaeplastida
Pp3c10_8500V3.1	No alias	Ribosomal protein L6 family	0.28	Archaeplastida
Pp3c14_8600V3.1	No alias	Ribosomal protein L6 family	0.33	Archaeplastida
Pp3c16_20070V3.1	No alias	Ribosomal protein L6 family	0.24	Archaeplastida
Pp3c27_8190V3.1	No alias	Ribosomal protein L6 family	0.37	Archaeplastida
Smo269009	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.2	Archaeplastida
Zm00001e025404_P001	No alias	component RPL9 of LSU proteome component	0.16	Archaeplastida
Zm00001e029810_P003	No alias	component RPL9 of LSU proteome component	0.45	Archaeplastida
Zm00001e036699_P002	No alias	component RPL9 of LSU proteome component	0.27	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
MF	GO:0008135	translation factor activity, RNA binding	IEP	Neighborhood
CC	GO:0015934	large ribosomal subunit	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044391	ribosomal subunit	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	12	90
IPR020040	Ribosomal_L6_a/b-dom	102	181

External Links

No external refs found!

Solyc06g073310.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation