1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc06g082310.3.1

Solyc06g082310.3.1


Description : transcription factor (AS2/LOB)


Gene families : OG0000101 (Archaeplastida) Phylogenetic Tree(s): OG0000101_tree ,
OG_05_0000037 (LandPlants) Phylogenetic Tree(s): OG_05_0000037_tree ,
OG_06_0000043 (SeedPlants) Phylogenetic Tree(s): OG_06_0000043_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g082310.3.1
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00241970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AMTR_s00021p00187850 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AMTR_s00076p00127530 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
AT1G07900 LBD1 LOB domain-containing protein 1 0.03 Archaeplastida
AT1G31320 LBD4 LOB domain-containing protein 4 0.04 Archaeplastida
AT2G28500 LBD11 LOB domain-containing protein 11 0.03 Archaeplastida
AT2G30130 LBD12, ASL5, PCK1 Lateral organ boundaries (LOB) domain family protein 0.03 Archaeplastida
AT2G30340 LBD13 LOB domain-containing protein 13 0.13 Archaeplastida
AT2G40470 LBD15, ASL11 LOB domain-containing protein 15 0.03 Archaeplastida
AT5G63090 LOB Lateral organ boundaries (LOB) domain family protein 0.05 Archaeplastida
GSVIVT01003546001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01003547001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01004323001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01010625001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.02 Archaeplastida
GSVIVT01016334001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01018486001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
GSVIVT01024662001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.05 Archaeplastida
GSVIVT01032592001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.03 Archaeplastida
GSVIVT01032714001 No alias RNA biosynthesis.transcriptional activation.AS2/LOB... 0.04 Archaeplastida
Gb_10524 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_16914 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_19720 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Gb_20676 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_21467 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
Gb_22180 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Gb_23794 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
LOC_Os01g07480.2 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
LOC_Os05g07270.1 No alias transcription factor (AS2/LOB) 0.11 Archaeplastida
LOC_Os05g27980.1 No alias transcription factor (AS2/LOB) 0.12 Archaeplastida
LOC_Os09g19950.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
MA_127139g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_16646g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_445236g0010 No alias transcription factor (AS2/LOB) 0.02 Archaeplastida
MA_88711g0010 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
MA_9412105g0010 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Mp4g10500.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Mp5g17820.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Mp7g14810.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Pp3c19_19610V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.02 Archaeplastida
Pp3c20_10200V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.04 Archaeplastida
Pp3c22_5950V3.1 No alias Lateral organ boundaries (LOB) domain family protein 0.04 Archaeplastida
Pp3c23_14630V3.1 No alias LOB domain-containing protein 13 0.02 Archaeplastida
Solyc02g086480.1.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc05g048740.3.1 No alias transcription factor (AS2/LOB) 0.01 Archaeplastida
Solyc06g007390.4.1 No alias transcription factor (AS2/LOB) 0.04 Archaeplastida
Solyc06g050950.3.1 No alias transcription factor (AS2/LOB) 0.05 Archaeplastida
Solyc06g071660.3.1 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Solyc11g072470.3.1 No alias transcription factor (AS2/LOB) 0.06 Archaeplastida
Zm00001e026736_P001 No alias transcription factor (AS2/LOB) 0.09 Archaeplastida
Zm00001e030195_P001 No alias transcription factor (AS2/LOB) 0.03 Archaeplastida
Zm00001e031510_P001 No alias transcription factor (AS2/LOB) 0.11 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004883 LOB 7 104
No external refs found!