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  5. Solyc06g082650.4.1

Solyc06g082650.4.1


Description : component RPL10 of LSU proteome component


Gene families : OG0002582 (Archaeplastida) Phylogenetic Tree(s): OG0002582_tree ,
OG_05_0002513 (LandPlants) Phylogenetic Tree(s): OG_05_0002513_tree ,
OG_06_0087325 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g082650.4.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00072p00080890 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
AMTR_s00077p00151750 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 Archaeplastida
AT1G14320 SAC52, RPL10, RPL10A Ribosomal protein L16p/L10e family protein 0.48 Archaeplastida
AT1G26910 RPL10B Ribosomal protein L16p/L10e family protein 0.07 Archaeplastida
Cpa|evm.model.tig00001424.5 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.23 Archaeplastida
GSVIVT01001137001 No alias 60S ribosomal protein L10 OS=Vitis riparia 0.27 Archaeplastida
GSVIVT01024537001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 Archaeplastida
Gb_06067 No alias component RPL10 of LSU proteome component 0.19 Archaeplastida
LOC_Os11g11390.1 No alias component RPL10 of LSU proteome component 0.2 Archaeplastida
MA_17326g0010 No alias component RPL10 of LSU proteome component 0.33 Archaeplastida
Mp4g23990.1 No alias component RPL10 of LSU proteome component 0.57 Archaeplastida
Pp3c11_4130V3.1 No alias Ribosomal protein L16p/L10e family protein 0.29 Archaeplastida
Pp3c1_3170V3.1 No alias Ribosomal protein L16p/L10e family protein 0.36 Archaeplastida
Pp3c2_29600V3.1 No alias Ribosomal protein L16p/L10e family protein 0.41 Archaeplastida
Pp3c7_22400V3.1 No alias Ribosomal protein L16p/L10e family protein 0.29 Archaeplastida
Smo437527 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Zm00001e004933_P001 No alias component RPL10 of LSU proteome component 0.16 Archaeplastida
Zm00001e012474_P002 No alias component RPL10 of LSU proteome component 0.13 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 12 166
No external refs found!