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  5. Solyc06g082710.4.1

Solyc06g082710.4.1


Description : KH domain-containing protein At3g08620 OS=Arabidopsis thaliana (sp|q8gyr4|qkil4_arath : 368.0)


Gene families : OG0001008 (Archaeplastida) Phylogenetic Tree(s): OG0001008_tree ,
OG_05_0000848 (LandPlants) Phylogenetic Tree(s): OG_05_0000848_tree ,
OG_06_0001767 (SeedPlants) Phylogenetic Tree(s): OG_06_0001767_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g082710.4.1
Cluster HCCA: Cluster_270

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01014762001 No alias KH domain-containing protein At5g56140 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01029865001 No alias KH domain-containing protein At3g08620 OS=Arabidopsis thaliana 0.04 Archaeplastida
MA_16831g0020 No alias KH domain-containing protein SPIN1 OS=Oryza sativa... 0.02 Archaeplastida
Solyc10g074870.2.1 No alias KH domain-containing protein At2g38610 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e015688_P001 No alias KH domain-containing protein At5g56140 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0052855 ADP-dependent NAD(P)H-hydrate dehydratase activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR032377 STAR_dimer 26 70
IPR004088 KH_dom_type_1 146 188
No external refs found!