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  5. Solyc06g083300.4.1

Solyc06g083300.4.1


Description : mRNA endoribonuclease (G3BP)


Gene families : OG0000605 (Archaeplastida) Phylogenetic Tree(s): OG0000605_tree ,
OG_05_0001455 (LandPlants) Phylogenetic Tree(s): OG_05_0001455_tree ,
OG_06_0001520 (SeedPlants) Phylogenetic Tree(s): OG_06_0001520_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc06g083300.4.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000829.13 No alias No description available 0.02 Archaeplastida
GSVIVT01027918001 No alias No description available 0.04 Archaeplastida
Gb_11766 No alias mRNA endoribonuclease (G3BP) 0.04 Archaeplastida
Gb_32671 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
Gb_35692 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
LOC_Os04g43150.2 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
MA_1896g0010 No alias mRNA endoribonuclease (G3BP) 0.02 Archaeplastida
Pp3c26_10400V3.1 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.05 Archaeplastida
Pp3c26_10520V3.1 No alias Nuclear transport factor 2 (NTF2) family protein with... 0.04 Archaeplastida
Solyc09g090940.3.1 No alias mRNA endoribonuclease (G3BP) 0.03 Archaeplastida
Zm00001e008436_P002 No alias mRNA endoribonuclease (G3BP) 0.04 Archaeplastida
Zm00001e035428_P001 No alias mRNA endoribonuclease (G3BP) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004725 protein tyrosine phosphatase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 301 359
IPR002075 NTF2 20 136
No external refs found!