1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g017605.1.1

Solyc07g017605.1.1


Description : Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana (sp|q94hw2|polr1_arath : 113.0)


Gene families : OG0000100 (Archaeplastida) Phylogenetic Tree(s): OG0000100_tree ,
OG_05_0000036 (LandPlants) Phylogenetic Tree(s): OG_05_0000036_tree ,
OG_06_0000011 (SeedPlants) Phylogenetic Tree(s): OG_06_0000011_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g017605.1.1
Cluster HCCA: Cluster_172

Target Alias Description ECC score Gene Family Method Actions
Gb_03554 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.03 Archaeplastida
Solyc01g011005.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.03 Archaeplastida
Solyc01g058685.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc01g067173.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc01g150117.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.04 Archaeplastida
Solyc02g005608.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc02g150117.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.03 Archaeplastida
Solyc04g005015.1.1 No alias no hits & (original description: none) 0.07 Archaeplastida
Solyc04g074195.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc05g016717.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.02 Archaeplastida
Solyc06g011407.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.03 Archaeplastida
Solyc06g033955.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc06g035625.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.03 Archaeplastida
Solyc07g015905.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc07g040905.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.04 Archaeplastida
Solyc07g043485.1.1 No alias No annotation 0.03 Archaeplastida
Solyc07g061865.1.1 No alias No annotation 0.03 Archaeplastida
Solyc08g042065.1.1 No alias No annotation 0.05 Archaeplastida
Solyc08g065695.1.1 No alias No annotation 0.07 Archaeplastida
Solyc09g059105.1.1 No alias No annotation 0.04 Archaeplastida
Solyc09g059157.1.1 No alias No annotation 0.05 Archaeplastida
Solyc09g059335.1.1 No alias No annotation 0.03 Archaeplastida
Solyc09g059993.1.1 No alias No annotation 0.03 Archaeplastida
Solyc10g018197.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.03 Archaeplastida
Solyc10g049287.1.1 No alias No annotation 0.03 Archaeplastida
Solyc10g049476.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc11g020847.1.1 No alias No annotation 0.06 Archaeplastida
Solyc11g045338.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.05 Archaeplastida
Solyc11g062065.1.1 No alias No annotation 0.03 Archaeplastida
Solyc11g063747.1.1 No alias No annotation 0.03 Archaeplastida
Solyc11g064945.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc12g038875.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.03 Archaeplastida
Solyc12g040817.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc12g042565.1.1 No alias No annotation 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004615 phosphomannomutase activity IEP Neighborhood
MF GO:0008061 chitin binding IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
BP GO:0009225 nucleotide-sugar metabolic process IEP Neighborhood
BP GO:0009226 nucleotide-sugar biosynthetic process IEP Neighborhood
BP GO:0009298 GDP-mannose biosynthetic process IEP Neighborhood
BP GO:0009767 photosynthetic electron transport chain IEP Neighborhood
MF GO:0016168 chlorophyll binding IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Neighborhood
BP GO:0019673 GDP-mannose metabolic process IEP Neighborhood
BP GO:0019684 photosynthesis, light reaction IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!