1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00027p00246860

AMTR_s00027p00246860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00027.158

Description : Endoglucanase 23 OS=Oryza sativa subsp. japonica


Gene families : OG0000093 (Archaeplastida) Phylogenetic Tree(s): OG0000093_tree ,
OG_05_0000198 (LandPlants) Phylogenetic Tree(s): OG_05_0000198_tree ,
OG_06_0000304 (SeedPlants) Phylogenetic Tree(s): OG_06_0000304_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00027p00246860
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00070580 evm_27.TU.AmTr_v1... Endoglucanase 3 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G70710 CEL1, GH9B1, ATGH9B1 glycosyl hydrolase 9B1 0.02 Archaeplastida
GSVIVT01018619001 No alias Endoglucanase 8 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01019420001 No alias Endoglucanase OS=Phaseolus vulgaris 0.03 Archaeplastida
GSVIVT01019523001 No alias Endoglucanase 6 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01037210001 No alias Cell wall.cellulose.degradation.endo-1,4-beta-glucanase 0.04 Archaeplastida
Gb_26728 No alias Endoglucanase 19 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g12030.1 No alias Endoglucanase 1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os01g21070.1 No alias Endoglucanase 3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g53820.1 No alias Endoglucanase 8 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os06g14540.1 No alias Endoglucanase 17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os08g29770.1 No alias Endoglucanase 20 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c13_24600V3.1 No alias glycosyl hydrolase 9C2 0.04 Archaeplastida
Pp3c4_23640V3.1 No alias glycosyl hydrolase 9B7 0.02 Archaeplastida
Pp3c5_9540V3.1 No alias glycosyl hydrolase 9A1 0.04 Archaeplastida
Pp3c6_25940V3.1 No alias glycosyl hydrolase 9C2 0.03 Archaeplastida
Smo109529 No alias Endoglucanase 19 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo234652 No alias Endoglucanase 6 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc03g083820.3.1 No alias Endoglucanase 8 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc08g083210.3.1 No alias Endoglucanase 1 OS=Persea americana... 0.02 Archaeplastida
Solyc11g040340.3.1 No alias endo-1,4-beta-glucanase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004512 inositol-3-phosphate synthase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
BP GO:0006020 inositol metabolic process IEP Neighborhood
BP GO:0006021 inositol biosynthetic process IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0008654 phospholipid biosynthetic process IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016872 intramolecular lyase activity IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
BP GO:0043086 negative regulation of catalytic activity IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
BP GO:0044092 negative regulation of molecular function IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
BP GO:0046173 polyol biosynthetic process IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0050790 regulation of catalytic activity IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001701 Glyco_hydro_9 29 484
No external refs found!