Solyc07g041310.3.1

Description : component RPS3 of SSU proteome

Gene families : OG0002305 (Archaeplastida) Phylogenetic Tree(s): OG0002305_tree ,
OG_05_0001961 (LandPlants) Phylogenetic Tree(s): OG_05_0001961_tree ,
OG_06_0002250 (SeedPlants) Phylogenetic Tree(s): OG_06_0002250_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g041310.3.1
Cluster	HCCA: Cluster_222

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00024p00219330	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.19	Archaeplastida
AMTR_s00030p00157370	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.11	Archaeplastida
AT2G31610	No alias	Ribosomal protein S3 family protein	0.1	Archaeplastida
AT3G53870	No alias	Ribosomal protein S3 family protein	0.26	Archaeplastida
AT5G35530	No alias	Ribosomal protein S3 family protein	0.34	Archaeplastida
Cpa\|evm.model.tig00021462.41	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.24	Archaeplastida
Cre02.g102250	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.22	Archaeplastida
GSVIVT01015110001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.16	Archaeplastida
GSVIVT01016775001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.22	Archaeplastida
GSVIVT01035451001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	Archaeplastida
Gb_26536	No alias	component RPS3 of SSU proteome	0.12	Archaeplastida
LOC_Os03g38000.1	No alias	component RPS3 of SSU proteome	0.3	Archaeplastida
LOC_Os07g41750.1	No alias	component RPS3 of SSU proteome	0.16	Archaeplastida
MA_10436283g0010	No alias	component RPS3 of SSU proteome	0.16	Archaeplastida
MA_120861g0010	No alias	component RPS3 of SSU proteome	0.17	Archaeplastida
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.3	Archaeplastida
Pp3c11_22640V3.1	No alias	Ribosomal protein S3 family protein	0.3	Archaeplastida
Pp3c15_21360V3.1	No alias	Ribosomal protein S3 family protein	0.18	Archaeplastida
Pp3c16_3760V3.1	No alias	Ribosomal protein S3 family protein	0.13	Archaeplastida
Pp3c5_5330V3.1	No alias	Ribosomal protein S3 family protein	0.14	Archaeplastida
Pp3c7_2620V3.1	No alias	Ribosomal protein S3 family protein	0.25	Archaeplastida
Pp3c9_12170V3.1	No alias	Ribosomal protein S3 family protein	0.24	Archaeplastida
Smo270414	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.14	Archaeplastida
Smo270666	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	Archaeplastida
Smo438700	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	Archaeplastida
Zm00001e021687_P001	No alias	component RPS3 of SSU proteome	0.28	Archaeplastida
Zm00001e035528_P001	No alias	component RPS3 of SSU proteome	0.03	Archaeplastida
Zm00001e040177_P002	No alias	component RPS3 of SSU proteome	0.28	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Neighborhood
BP	GO:0000154	rRNA modification	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
BP	GO:0001522	pseudouridine synthesis	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003746	translation elongation factor activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005741	mitochondrial outer membrane	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006364	rRNA processing	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006414	translational elongation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008168	methyltransferase activity	IEP	Neighborhood
MF	GO:0008173	RNA methyltransferase activity	IEP	Neighborhood
MF	GO:0008649	rRNA methyltransferase activity	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016072	rRNA metabolic process	IEP	Neighborhood
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Neighborhood
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0019867	outer membrane	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0030488	tRNA methylation	IEP	Neighborhood
BP	GO:0031167	rRNA methylation	IEP	Neighborhood
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Neighborhood
CC	GO:0031968	organelle outer membrane	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0043527	tRNA methyltransferase complex	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0070475	rRNA base methylation	IEP	Neighborhood
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
CC	GO:0098805	whole membrane	IEP	Neighborhood
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001351	Ribosomal_S3_C	109	191
IPR004044	KH_dom_type_2	23	96

External Links

No external refs found!

Solyc07g041310.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation