1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc07g042250.3.1

Solyc07g042250.3.1


Description : CPN20 auxiliary co-chaperone involved in RuBisCo assembly. Hsp60-co-chaperone (Hsp20)


Gene families : OG0002206 (Archaeplastida) Phylogenetic Tree(s): OG0002206_tree ,
OG_05_0002586 (LandPlants) Phylogenetic Tree(s): OG_05_0002586_tree ,
OG_06_0003596 (SeedPlants) Phylogenetic Tree(s): OG_06_0003596_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g042250.3.1
Cluster HCCA: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00267680 evm_27.TU.AmTr_v1... External stimuli response.temperature.Hsp... 0.03 Archaeplastida
AT5G20720 CPN21, ATCPN21,... chaperonin 20 0.12 Archaeplastida
Cre08.g358562 No alias External stimuli response.temperature.Hsp... 0.05 Archaeplastida
Cre12.g505850 No alias External stimuli response.temperature.Hsp... 0.08 Archaeplastida
GSVIVT01008295001 No alias External stimuli response.temperature.Hsp... 0.07 Archaeplastida
GSVIVT01015036001 No alias External stimuli response.temperature.Hsp... 0.09 Archaeplastida
Gb_18360 No alias CPN20 auxiliary co-chaperone involved in RuBisCo... 0.05 Archaeplastida
LOC_Os06g09679.1 No alias CPN20 auxiliary co-chaperone involved in RuBisCo... 0.09 Archaeplastida
LOC_Os09g26730.1 No alias CPN20 auxiliary co-chaperone involved in RuBisCo... 0.08 Archaeplastida
Mp1g10690.1 No alias CPN20 auxiliary co-chaperone involved in RuBisCo... 0.06 Archaeplastida
Pp3c19_4220V3.1 No alias chaperonin 20 0.03 Archaeplastida
Pp3c19_4270V3.1 No alias chaperonin 20 0.03 Archaeplastida
Pp3c22_7570V3.1 No alias chaperonin 20 0.14 Archaeplastida
Pp3c22_7600V3.1 No alias chaperonin 20 0.04 Archaeplastida
Smo270691 No alias External stimuli response.temperature.Hsp... 0.06 Archaeplastida
Zm00001e009881_P001 No alias CPN20 auxiliary co-chaperone involved in RuBisCo... 0.07 Archaeplastida
Zm00001e036248_P001 No alias CPN20 auxiliary co-chaperone involved in RuBisCo... 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006457 protein folding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0004637 phosphoribosylamine-glycine ligase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0004797 thymidine kinase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006144 purine nucleobase metabolic process IEP Neighborhood
BP GO:0006553 lysine metabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Neighborhood
BP GO:0009066 aspartate family amino acid metabolic process IEP Neighborhood
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Neighborhood
BP GO:0009085 lysine biosynthetic process IEP Neighborhood
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009113 purine nucleobase biosynthetic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019136 deoxynucleoside kinase activity IEP Neighborhood
MF GO:0019205 nucleobase-containing compound kinase activity IEP Neighborhood
MF GO:0019206 nucleoside kinase activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042440 pigment metabolic process IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043648 dicarboxylic acid metabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0046148 pigment biosynthetic process IEP Neighborhood
BP GO:0046451 diaminopimelate metabolic process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901605 alpha-amino acid metabolic process IEP Neighborhood
BP GO:1901607 alpha-amino acid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR020818 Chaperonin_GroES 160 251
IPR020818 Chaperonin_GroES 62 151
No external refs found!