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  5. Solyc07g053750.1.1

Solyc07g053750.1.1


Description : mRNA-binding regulatory factor (TZF)


Gene families : OG0001103 (Archaeplastida) Phylogenetic Tree(s): OG0001103_tree ,
OG_05_0000849 (LandPlants) Phylogenetic Tree(s): OG_05_0000849_tree ,
OG_06_0000726 (SeedPlants) Phylogenetic Tree(s): OG_06_0000726_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g053750.1.1
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AT1G03790 SOM Zinc finger C-x8-C-x5-C-x3-H type family protein 0.13 Archaeplastida
AT2G19810 No alias CCCH-type zinc finger family protein 0.02 Archaeplastida
AT4G29190 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.03 Archaeplastida
AT5G07500 PEI1 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.09 Archaeplastida
Cre03.g146267 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.01 Archaeplastida
GSVIVT01013901001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.08 Archaeplastida
LOC_Os01g53650.1 No alias mRNA-binding regulatory factor (TZF) 0.16 Archaeplastida
LOC_Os05g10670.1 No alias mRNA-binding regulatory factor (TZF) 0.03 Archaeplastida
LOC_Os05g45020.1 No alias mRNA-binding regulatory factor (TZF) 0.04 Archaeplastida
Pp3c20_23770V3.1 No alias Zinc finger C-x8-C-x5-C-x3-H type family protein 0.02 Archaeplastida
Solyc12g008660.1.1 No alias mRNA-binding regulatory factor (TZF) 0.01 Archaeplastida
Zm00001e016582_P001 No alias mRNA-binding regulatory factor (TZF) 0.02 Archaeplastida
Zm00001e027132_P001 No alias mRNA-binding regulatory factor (TZF) 0.02 Archaeplastida
Zm00001e031293_P001 No alias mRNA-binding regulatory factor (TZF) 0.02 Archaeplastida
Zm00001e032199_P001 No alias mRNA-binding regulatory factor (TZF) 0.11 Archaeplastida
Zm00001e035805_P001 No alias mRNA-binding regulatory factor (TZF) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003872 6-phosphofructokinase activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004356 glutamate-ammonia ligase activity IEP Neighborhood
MF GO:0004470 malic enzyme activity IEP Neighborhood
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Neighborhood
MF GO:0004474 malate synthase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005811 lipid droplet IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006097 glyoxylate cycle IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
BP GO:0006541 glutamine metabolic process IEP Neighborhood
BP GO:0006542 glutamine biosynthetic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008443 phosphofructokinase activity IEP Neighborhood
BP GO:0009064 glutamine family amino acid metabolic process IEP Neighborhood
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009415 response to water IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
MF GO:0009916 alternative oxidase activity IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
CC GO:0012511 monolayer-surrounded lipid storage body IEP Neighborhood
MF GO:0016211 ammonia ligase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016615 malate dehydrogenase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Neighborhood
MF GO:0019200 carbohydrate kinase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0032787 monocarboxylic acid metabolic process IEP Neighborhood
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0046487 glyoxylate metabolic process IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 132 152
No external refs found!