1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00028p00216930

AMTR_s00028p00216930 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00028.104

Description : Light-induced protein, chloroplastic OS=Solanum tuberosum


Gene families : OG0001860 (Archaeplastida) Phylogenetic Tree(s): OG0001860_tree ,
OG_05_0002761 (LandPlants) Phylogenetic Tree(s): OG_05_0002761_tree ,
OG_06_0002525 (SeedPlants) Phylogenetic Tree(s): OG_06_0002525_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00028p00216930
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT4G04020 FIB fibrillin 0.02 Archaeplastida
AT4G22240 No alias Plastid-lipid associated protein PAP / fibrillin family protein 0.02 Archaeplastida
Smo163532 No alias Plastid lipid-associated protein 2, chloroplastic... 0.02 Archaeplastida
Solyc02g081170.4.1 No alias Light-induced protein, chloroplastic OS=Solanum... 0.02 Archaeplastida
Solyc08g005220.4.1 No alias Probable plastid-lipid-associated protein 3,... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA Interproscan
CC GO:0009507 chloroplast IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Neighborhood
MF GO:0003997 acyl-CoA oxidase activity IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006635 fatty acid beta-oxidation IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0009062 fatty acid catabolic process IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016054 organic acid catabolic process IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
BP GO:0019395 fatty acid oxidation IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034440 lipid oxidation IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0046395 carboxylic acid catabolic process IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0072329 monocarboxylic acid catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006843 PAP/fibrillin_dom 94 310
No external refs found!