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  5. Solyc07g062770.2.1

Solyc07g062770.2.1


Description : component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage response heterodimer


Gene families : OG0001589 (Archaeplastida) Phylogenetic Tree(s): OG0001589_tree ,
OG_05_0007251 (LandPlants) Phylogenetic Tree(s): OG_05_0007251_tree ,
OG_06_0008578 (SeedPlants) Phylogenetic Tree(s): OG_06_0008578_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g062770.2.1
Cluster HCCA: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00066p00084950 evm_27.TU.AmTr_v1... ATPase family AAA domain-containing protein At1g05910... 0.03 Archaeplastida
AT3G15120 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Archaeplastida
GSVIVT01010750001 No alias ATPase family AAA domain-containing protein At1g05910... 0.04 Archaeplastida
GSVIVT01014274001 No alias DNA damage response.BRCA1–BARD1 DNA-damage response... 0.1 Archaeplastida
Gb_05160 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 Archaeplastida
Gb_11471 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.06 Archaeplastida
LOC_Os01g47800.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os09g33980.1 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 Archaeplastida
MA_10425878g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10425878g0020 No alias ATPase family AAA domain-containing protein At1g05910... 0.07 Archaeplastida
MA_10432357g0010 No alias ATPase family AAA domain-containing protein At1g05910... 0.12 Archaeplastida
Mp1g06470.1 No alias component BRCA1|BARD1 of BRCA1–BARD1 DNA-damage... 0.04 Archaeplastida
Mp2g00420.1 No alias ATPase family AAA domain-containing protein At1g05910... 0.05 Archaeplastida
Pp3c23_2940V3.1 No alias cell division cycle protein 48-related / CDC48-related 0.09 Archaeplastida
Pp3c8_5410V3.1 No alias P-loop containing nucleoside triphosphate hydrolases... 0.11 Archaeplastida
Smo170139 No alias ATPase family AAA domain-containing protein At1g05910... 0.05 Archaeplastida
Smo23739 No alias ATPase family AAA domain-containing protein At1g05910... 0.03 Archaeplastida
Zm00001e020208_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e034695_P003 No alias ATPase family AAA domain-containing protein At1g05910... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
CC GO:0070652 HAUS complex IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 662 797
No external refs found!