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  5. Solyc07g064190.3.1

Solyc07g064190.3.1


Description : pectin methylesterase


Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc07g064190.3.1
Cluster HCCA: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00230630 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00003p00238240 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
AMTR_s00003p00239700 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00007p00101250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00021p00242180 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AMTR_s00033p00227850 evm_27.TU.AmTr_v1... Probable pectinesterase/pectinesterase inhibitor 21... 0.04 Archaeplastida
AMTR_s00040p00188020 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
AMTR_s00129p00028250 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
AMTR_s00129p00070300 evm_27.TU.AmTr_v1... Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
AT1G53830 ATPME2, PME2 pectin methylesterase 2 0.04 Archaeplastida
AT2G26450 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT2G43050 ATPMEPCRD Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
AT2G45220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G43270 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G47400 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT3G49220 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT3G59010 PME61 pectin methylesterase 61 0.03 Archaeplastida
AT4G33220 PME44, ATPME44 pectin methylesterase 44 0.03 Archaeplastida
AT5G04970 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G09760 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
AT5G27870 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G49180 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.04 Archaeplastida
AT5G51500 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
AT5G53370 ATPMEPCRF, PMEPCRF pectin methylesterase PCR fragment F 0.05 Archaeplastida
GSVIVT01012639001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01015000001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01016667001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01017687001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01026518001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
GSVIVT01027652001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01027653001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01028040001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01028264001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
GSVIVT01031165001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.02 Archaeplastida
GSVIVT01038546001 No alias Cell wall.pectin.homogalacturonan.modification and... 0.04 Archaeplastida
Gb_01422 No alias pectin methylesterase 0.05 Archaeplastida
Gb_03174 No alias pectin methylesterase 0.02 Archaeplastida
Gb_05254 No alias pectin methylesterase 0.02 Archaeplastida
Gb_06354 No alias pectin methylesterase 0.02 Archaeplastida
Gb_06356 No alias pectin methylesterase 0.02 Archaeplastida
Gb_10522 No alias pectin methylesterase 0.03 Archaeplastida
Gb_10523 No alias pectin methylesterase 0.03 Archaeplastida
Gb_28387 No alias pectin methylesterase 0.04 Archaeplastida
Gb_36012 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os01g13320.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os01g21034.1 No alias pectin methylesterase 0.05 Archaeplastida
LOC_Os01g65790.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os02g54190.1 No alias pectin methylesterase 0.06 Archaeplastida
LOC_Os04g38560.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os05g29790.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os06g09340.1 No alias pectin methylesterase 0.04 Archaeplastida
LOC_Os07g47830.1 No alias pectin methylesterase 0.02 Archaeplastida
LOC_Os08g34900.1 No alias pectin methylesterase 0.03 Archaeplastida
LOC_Os11g08750.1 No alias pectin methylesterase 0.03 Archaeplastida
MA_10332149g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_10435891g0010 No alias pectin methylesterase 0.04 Archaeplastida
MA_10436266g0010 No alias Pectinesterase 3 OS=Citrus sinensis... 0.03 Archaeplastida
MA_158002g0020 No alias pectin methylesterase 0.02 Archaeplastida
MA_18093g0010 No alias Pectinesterase 2.1 OS=Solanum lycopersicum... 0.03 Archaeplastida
MA_26888g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_354248g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_648837g0010 No alias pectin methylesterase 0.03 Archaeplastida
MA_74624g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_931259g0010 No alias pectin methylesterase 0.02 Archaeplastida
MA_96515g0010 No alias pectin methylesterase 0.04 Archaeplastida
Mp8g00060.1 No alias pectin methylesterase 0.04 Archaeplastida
Mp8g09330.1 No alias pectin methylesterase 0.03 Archaeplastida
Pp3c17_6440V3.1 No alias pectin methylesterase PCR fragment F 0.05 Archaeplastida
Pp3c18_170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c21_11740V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.07 Archaeplastida
Pp3c21_22110V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c26_2170V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.03 Archaeplastida
Pp3c3_36450V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Archaeplastida
Pp3c8_3840V3.1 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.05 Archaeplastida
Smo114014 No alias Cell wall.pectin.homogalacturonan.modification and... 0.05 Archaeplastida
Smo266995 No alias Cell wall.pectin.homogalacturonan.modification and... 0.03 Archaeplastida
Smo420760 No alias Cell wall.pectin.homogalacturonan.modification and... 0.06 Archaeplastida
Solyc01g091050.4.1 No alias pectin methylesterase 0.06 Archaeplastida
Solyc02g080200.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc02g080220.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc03g078100.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc06g034360.2.1 No alias pectin methylesterase 0.04 Archaeplastida
Solyc07g017600.3.1 No alias pectin methylesterase 0.04 Archaeplastida
Zm00001e007917_P002 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e009863_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e011069_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e017514_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e017515_P001 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e019069_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e025576_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e026790_P001 No alias pectin methylesterase 0.05 Archaeplastida
Zm00001e034231_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e035838_P001 No alias pectin methylesterase 0.03 Archaeplastida
Zm00001e041757_P001 No alias pectin methylesterase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA Interproscan
MF GO:0030599 pectinesterase activity IEA Interproscan
BP GO:0042545 cell wall modification IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
InterPro domains Description Start Stop
IPR006501 Pectinesterase_inhib_dom 61 198
IPR000070 Pectinesterase_cat 239 535
No external refs found!