Description : DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana (sp|q9fft9|rh32_arath : 769.0)
Gene families : OG0000482 (Archaeplastida) Phylogenetic Tree(s): OG0000482_tree ,
OG_05_0006899 (LandPlants) Phylogenetic Tree(s): OG_05_0006899_tree ,
OG_06_0007714 (SeedPlants) Phylogenetic Tree(s): OG_06_0007714_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc07g064520.3.1 | |
Cluster | HCCA: Cluster_209 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00002p00225030 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.03 | Archaeplastida | |
AMTR_s00002p00261540 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.03 | Archaeplastida | |
AMTR_s00007p00266810 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
AMTR_s00062p00159540 | evm_27.TU.AmTr_v1... | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana | 0.07 | Archaeplastida | |
AT2G40700 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.15 | Archaeplastida | |
AT3G18600 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.14 | Archaeplastida | |
AT5G05450 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.04 | Archaeplastida | |
AT5G54910 | No alias | DEA(D/H)-box RNA helicase family protein | 0.04 | Archaeplastida | |
AT5G65900 | No alias | DEA(D/H)-box RNA helicase family protein | 0.03 | Archaeplastida | |
Cpa|evm.model.tig00000441.11 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.01 | Archaeplastida | |
Cpa|evm.model.tig00000615.43 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
Cpa|evm.model.tig00020684.38 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.05 | Archaeplastida | |
Cre03.g156150 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana | 0.25 | Archaeplastida | |
Cre03.g188550 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.15 | Archaeplastida | |
Cre06.g282600 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana | 0.07 | Archaeplastida | |
Cre07.g314900 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.27 | Archaeplastida | |
GSVIVT01008218001 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.11 | Archaeplastida | |
GSVIVT01015034001 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Arabidopsis thaliana | 0.05 | Archaeplastida | |
GSVIVT01032750001 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana | 0.07 | Archaeplastida | |
GSVIVT01037636001 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis thaliana | 0.12 | Archaeplastida | |
Gb_12810 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.05 | Archaeplastida | |
Gb_16157 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.04 | Archaeplastida | |
LOC_Os01g07080.1 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.13 | Archaeplastida | |
LOC_Os03g58810.1 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.16 | Archaeplastida | |
LOC_Os05g01990.1 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.02 | Archaeplastida | |
LOC_Os07g33340.1 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... | 0.09 | Archaeplastida | |
MA_10334041g0020 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... | 0.03 | Archaeplastida | |
MA_109969g0010 | No alias | DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis... | 0.03 | Archaeplastida | |
MA_7914832g0010 | No alias | No annotation | 0.01 | Archaeplastida | |
Mp5g04780.1 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis... | 0.03 | Archaeplastida | |
Mp6g05260.1 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.16 | Archaeplastida | |
Mp7g12890.1 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.2 | Archaeplastida | |
Mp8g10290.1 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Arabidopsis... | 0.1 | Archaeplastida | |
Pp3c11_510V3.1 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.02 | Archaeplastida | |
Pp3c17_13450V3.1 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.09 | Archaeplastida | |
Pp3c1_22540V3.1 | No alias | P-loop containing nucleoside triphosphate hydrolases... | 0.12 | Archaeplastida | |
Pp3c4_14810V3.1 | No alias | DEA(D/H)-box RNA helicase family protein | 0.15 | Archaeplastida | |
Smo104808 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.05 | Archaeplastida | |
Smo123861 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Smo230685 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.05 | Archaeplastida | |
Zm00001e010480_P001 | No alias | DEAD-box ATP-dependent RNA helicase 32 OS=Oryza sativa... | 0.18 | Archaeplastida | |
Zm00001e011842_P001 | No alias | DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa... | 0.22 | Archaeplastida | |
Zm00001e016823_P002 | No alias | DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa... | 0.16 | Archaeplastida | |
Zm00001e027024_P001 | No alias | DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... | 0.08 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Neighborhood |
BP | GO:0002097 | tRNA wobble base modification | IEP | Neighborhood |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Neighborhood |
MF | GO:0003678 | DNA helicase activity | IEP | Neighborhood |
MF | GO:0003723 | RNA binding | IEP | Neighborhood |
MF | GO:0003724 | RNA helicase activity | IEP | Neighborhood |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Neighborhood |
MF | GO:0004386 | helicase activity | IEP | Neighborhood |
MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005634 | nucleus | IEP | Neighborhood |
CC | GO:0005732 | small nucleolar ribonucleoprotein complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006364 | rRNA processing | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006400 | tRNA modification | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0009451 | RNA modification | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016072 | rRNA metabolic process | IEP | Neighborhood |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
CC | GO:0030684 | preribosome | IEP | Neighborhood |
CC | GO:0032040 | small-subunit processome | IEP | Neighborhood |
BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
CC | GO:0033588 | Elongator holoenzyme complex | IEP | Neighborhood |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Neighborhood |
CC | GO:0034457 | Mpp10 complex | IEP | Neighborhood |
BP | GO:0034470 | ncRNA processing | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
BP | GO:0034660 | ncRNA metabolic process | IEP | Neighborhood |
BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
BP | GO:0042274 | ribosomal small subunit biogenesis | IEP | Neighborhood |
BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044452 | nucleolar part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
MF | GO:0097747 | RNA polymerase activity | IEP | Neighborhood |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No external refs found! |