Solyc07g065350.2.1

Description : pectin methylesterase

Gene families : OG0000078 (Archaeplastida) Phylogenetic Tree(s): OG0000078_tree ,
OG_05_0000108 (LandPlants) Phylogenetic Tree(s): OG_05_0000108_tree ,
OG_06_0006240 (SeedPlants) Phylogenetic Tree(s): OG_06_0006240_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc07g065350.2.1
Cluster	HCCA: Cluster_49

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00264370	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AT1G11370	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT2G36710	No alias	Pectin lyase-like superfamily protein	0.04	Archaeplastida
AT2G47280	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
GSVIVT01031250001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
MA_99816g0010	No alias	pectin methylesterase	0.02	Archaeplastida
Mp4g01190.1	No alias	pectin methylesterase	0.02	Archaeplastida
Pp3c16_6660V3.1	No alias	Pectin lyase-like superfamily protein	0.02	Archaeplastida
Pp3c5_12750V3.1	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
Solyc02g075620.4.1	No alias	pectin methylesterase	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Neighborhood
BP	GO:0042254	ribosome biogenesis	IEP	Neighborhood
BP	GO:0044085	cellular component biogenesis	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	55	352

External Links

No external refs found!