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  5. Solyc08g005190.4.1

Solyc08g005190.4.1


Description : no hits & (original description: none)


Gene families : OG0003711 (Archaeplastida) Phylogenetic Tree(s): OG0003711_tree ,
OG_05_0003509 (LandPlants) Phylogenetic Tree(s): OG_05_0003509_tree ,
OG_06_0003685 (SeedPlants) Phylogenetic Tree(s): OG_06_0003685_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g005190.4.1
Cluster HCCA: Cluster_247

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000169.28 No alias No description available 0.01 Archaeplastida
Mp2g22570.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e039666_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005096 GTPase activator activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005672 transcription factor TFIIA complex IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 384 565
IPR003891 Initiation_fac_eIF4g_MI 671 777
No external refs found!