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  5. Solyc08g005390.1.1

Solyc08g005390.1.1


Description : Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana (sp|q9sjz3|pp169_arath : 472.0)


Gene families : OG0011611 (Archaeplastida) Phylogenetic Tree(s): OG0011611_tree ,
OG_05_0012126 (LandPlants) Phylogenetic Tree(s): OG_05_0012126_tree ,
OG_06_0012997 (SeedPlants) Phylogenetic Tree(s): OG_06_0012997_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g005390.1.1
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018393001 No alias Pentatricopeptide repeat-containing protein At1g09410,... 0.04 Archaeplastida
LOC_Os03g16450.1 No alias Pentatricopeptide repeat-containing protein At5g59600... 0.03 Archaeplastida
Zm00001e019460_P001 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.05 Archaeplastida
Zm00001e030731_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 139 185
IPR002885 Pentatricopeptide_repeat 41 88
IPR002885 Pentatricopeptide_repeat 373 420
IPR002885 Pentatricopeptide_repeat 270 318
IPR002885 Pentatricopeptide_repeat 214 239
IPR002885 Pentatricopeptide_repeat 447 471
IPR002885 Pentatricopeptide_repeat 240 267
No external refs found!