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  5. AMTR_s00029p00088380

AMTR_s00029p00088380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.80

Description : Probable metal-nicotianamine transporter YSL5 OS=Arabidopsis thaliana


Gene families : OG0000193 (Archaeplastida) Phylogenetic Tree(s): OG0000193_tree ,
OG_05_0010100 (LandPlants) Phylogenetic Tree(s): OG_05_0010100_tree ,
OG_06_0010148 (SeedPlants) Phylogenetic Tree(s): OG_06_0010148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00088380
Cluster HCCA: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
AT4G24120 ATYSL1, YSL1 YELLOW STRIPE like 1 0.02 Archaeplastida
AT5G41000 YSL4 YELLOW STRIPE like 4 0.02 Archaeplastida
GSVIVT01012035001 No alias Nutrient uptake.iron uptake.chelation-based strategy... 0.04 Archaeplastida
GSVIVT01019646001 No alias Nutrient uptake.iron uptake.chelation-based strategy... 0.04 Archaeplastida
GSVIVT01029329001 No alias Nutrient uptake.iron uptake.chelation-based strategy... 0.04 Archaeplastida
GSVIVT01029349001 No alias Nutrient uptake.iron uptake.chelation-based strategy... 0.03 Archaeplastida
LOC_Os02g42220.1 No alias iron chelator transporter (YSL). ferric cation-chelator... 0.03 Archaeplastida
LOC_Os04g45900.1 No alias iron chelator transporter (YSL). ferric cation-chelator... 0.03 Archaeplastida
LOC_Os05g16290.1 No alias iron chelator transporter (YSL). ferric cation-chelator... 0.02 Archaeplastida
MA_10433264g0010 No alias Probable metal-nicotianamine transporter YSL12 OS=Oryza... 0.04 Archaeplastida
MA_110581g0010 No alias iron chelator transporter (YSL). ferric cation-chelator... 0.03 Archaeplastida
MA_5416460g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e007544_P001 No alias iron chelator transporter (YSL). ferric cation-chelator... 0.03 Archaeplastida
Zm00001e023053_P001 No alias iron chelator transporter (YSL). ferric cation-chelator... 0.06 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR004813 OPT 44 118
No external refs found!