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  5. Solyc08g061820.3.1

Solyc08g061820.3.1


Description : F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana (sp|q9smy8|fbl15_arath : 1038.0)


Gene families : OG0003439 (Archaeplastida) Phylogenetic Tree(s): OG0003439_tree ,
OG_05_0003770 (LandPlants) Phylogenetic Tree(s): OG_05_0003770_tree ,
OG_06_0004571 (SeedPlants) Phylogenetic Tree(s): OG_06_0004571_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g061820.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AT4G33210 SLOMO F-box family protein 0.04 Archaeplastida
Cre12.g525600 No alias No description available 0.01 Archaeplastida
GSVIVT01035469001 No alias F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os10g25680.1 No alias F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10276236g0010 No alias F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana... 0.01 Archaeplastida
MA_10427191g0020 No alias F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10436729g0030 No alias F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Mp4g13760.1 No alias F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Smo133451 No alias F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana 0.03 Archaeplastida
Zm00001e004850_P002 No alias F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003689 DNA clamp loader activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006401 RNA catabolic process IEP Neighborhood
BP GO:0006402 mRNA catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
MF GO:0008094 DNA-dependent ATPase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0031023 microtubule organizing center organization IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0033170 protein-DNA loading ATPase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001810 F-box_dom 188 227
No external refs found!