1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g067320.3.1

Solyc08g067320.3.1


Description : Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum (sp|p14276|cb2e_sollc : 169.0)


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0000162 (LandPlants) Phylogenetic Tree(s): OG_05_0000162_tree ,
OG_06_0016336 (SeedPlants) Phylogenetic Tree(s): OG_06_0016336_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g067320.3.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.03 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.03 Archaeplastida
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.03 Archaeplastida
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.05 Archaeplastida
AT3G27690 LHCB2.3, LHCB2, LHCB2.4 photosystem II light harvesting complex gene 2.3 0.05 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.03 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.03 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.03 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre03.g156900 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre04.g232104 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.03 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre06.g284250 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.02 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.03 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.02 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.01 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01014439001 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
GSVIVT01015045001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01021405001 No alias Chlorophyll a-b binding protein 21, chloroplastic... 0.04 Archaeplastida
GSVIVT01021406001 No alias Chlorophyll a-b binding protein 2, chloroplastic... 0.08 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.07 Archaeplastida
GSVIVT01037111001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
Gb_00063 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Gb_27633 No alias component LHCb6 of LHC-II complex 0.05 Archaeplastida
Gb_30379 No alias Chlorophyll a-b binding protein CP26, chloroplastic... 0.02 Archaeplastida
Gb_41161 No alias component LHCb1/2/3 of LHC-II complex 0.08 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
LOC_Os01g52240.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
LOC_Os02g10390.1 No alias component LHCa3 of LHC-I complex 0.03 Archaeplastida
LOC_Os03g39610.1 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
LOC_Os04g38410.1 No alias component LHCb6 of LHC-II complex 0.06 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.04 Archaeplastida
LOC_Os07g37550.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.05 Archaeplastida
LOC_Os08g33820.1 No alias component LHCa4 of LHC-I complex 0.04 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os11g13890.1 No alias component LHCb5 of LHC-II complex 0.04 Archaeplastida
MA_10431300g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.03 Archaeplastida
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.02 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.01 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.02 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.02 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.01 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.01 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.02 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.01 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.01 Archaeplastida
Pp3c10_25360V3.1 No alias photosystem I light harvesting complex gene 2 0.03 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c12_25430V3.1 No alias light harvesting complex photosystem II 0.04 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c13_7900V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.06 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.04 Archaeplastida
Pp3c1_34240V3.1 No alias light harvesting complex photosystem II subunit 6 0.02 Archaeplastida
Pp3c20_23240V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c26_12230V3.1 No alias light harvesting complex of photosystem II 5 0.04 Archaeplastida
Pp3c26_12240V3.1 No alias light harvesting complex of photosystem II 5 0.03 Archaeplastida
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c27_7010V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_28370V3.1 No alias light harvesting complex of photosystem II 5 0.02 Archaeplastida
Pp3c4_29150V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c4_29270V3.1 No alias photosystem I light harvesting complex gene 1 0.02 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.03 Archaeplastida
Pp3c6_12510V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.03 Archaeplastida
Pp3c6_6830V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Smo160411 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Smo423144 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
Smo444370 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Zm00001e004940_P001 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e004941_P001 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.03 Archaeplastida
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Zm00001e025141_P001 No alias component LHCa1 of LHC-I complex 0.05 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.02 Archaeplastida
Zm00001e035249_P001 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 1 57
No external refs found!