1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc08g076200.4.1

Solyc08g076200.4.1


Description : DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica (sp|q6ys30|rh5_orysj : 694.0)


Gene families : OG0006971 (Archaeplastida) Phylogenetic Tree(s): OG0006971_tree ,
OG_05_0007677 (LandPlants) Phylogenetic Tree(s): OG_05_0007677_tree ,
OG_06_0008506 (SeedPlants) Phylogenetic Tree(s): OG_06_0008506_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g076200.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
Cre12.g539100 No alias DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa... 0.04 Archaeplastida
Mp6g19210.1 No alias DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 370 477
IPR011545 DEAD/DEAH_box_helicase_dom 159 328
No external refs found!