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  5. Solyc08g077890.3.1

Solyc08g077890.3.1


Description : non-proteolytic core component ClpR of chloroplast Clp-type protease complex


Gene families : OG0000861 (Archaeplastida) Phylogenetic Tree(s): OG0000861_tree ,
OG_05_0005703 (LandPlants) Phylogenetic Tree(s): OG_05_0005703_tree ,
OG_06_0007589 (SeedPlants) Phylogenetic Tree(s): OG_06_0007589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g077890.3.1
Cluster HCCA: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00194810 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.serine-type... 0.04 Archaeplastida
AMTR_s00164p00068000 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.serine-type... 0.09 Archaeplastida
AT1G09130 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.04 Archaeplastida
AT1G49970 CLPR1, SVR2, NCLPP5 CLP protease proteolytic subunit 1 0.06 Archaeplastida
AT4G17040 CLPR4 CLP protease R subunit 4 0.06 Archaeplastida
Cpa|evm.model.tig00020952.49 No alias Protein degradation.peptidase families.serine-type... 0.05 Archaeplastida
Cre03.g204350 No alias Protein degradation.peptidase families.serine-type... 0.04 Archaeplastida
Cre07.g331500 No alias Protein degradation.peptidase families.serine-type... 0.04 Archaeplastida
Cre14.g619100 No alias Protein degradation.peptidase families.serine-type... 0.06 Archaeplastida
GSVIVT01003696001 No alias Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
GSVIVT01031146001 No alias Protein degradation.peptidase families.serine-type... 0.04 Archaeplastida
GSVIVT01037850001 No alias Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
Gb_12676 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Archaeplastida
Gb_40312 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Archaeplastida
LOC_Os03g22430.1 No alias non-proteolytic core component ClpR of chloroplast... 0.06 Archaeplastida
LOC_Os05g51450.1 No alias non-proteolytic core component ClpR of chloroplast... 0.04 Archaeplastida
MA_10429819g0010 No alias No annotation 0.02 Archaeplastida
MA_10429819g0020 No alias non-proteolytic core component ClpR of chloroplast... 0.02 Archaeplastida
MA_6114g0010 No alias ATP-dependent Clp protease proteolytic subunit-related... 0.05 Archaeplastida
Mp6g21300.1 No alias non-proteolytic core component ClpR of chloroplast... 0.04 Archaeplastida
Mp7g03170.1 No alias non-proteolytic core component ClpR of chloroplast... 0.05 Archaeplastida
Pp3c2_27590V3.1 No alias CLP protease R subunit 4 0.05 Archaeplastida
Pp3c3_12000V3.1 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.02 Archaeplastida
Smo153292 No alias Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
Zm00001e001632_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e017288_P001 No alias non-proteolytic core component ClpR of chloroplast... 0.07 Archaeplastida
Zm00001e032571_P001 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0004359 glutaminase activity IEP Neighborhood
MF GO:0004655 porphobilinogen synthase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006766 vitamin metabolic process IEP Neighborhood
BP GO:0006767 water-soluble vitamin metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
BP GO:0009110 vitamin biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016836 hydro-lyase activity IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
BP GO:0042816 vitamin B6 metabolic process IEP Neighborhood
BP GO:0042819 vitamin B6 biosynthetic process IEP Neighborhood
BP GO:0042822 pyridoxal phosphate metabolic process IEP Neighborhood
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046184 aldehyde biosynthetic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 102 283
No external refs found!