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  5. Solyc08g080100.4.1

Solyc08g080100.4.1


Description : no hits & (original description: none)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc08g080100.4.1
Cluster HCCA: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00013p00103080 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00013p00114420 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00021p00254030 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.06 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AT2G24840 AGL61, DIA AGAMOUS-like 61 0.03 Archaeplastida
AT2G45660 SOC1, AGL20, ATSOC1 AGAMOUS-like 20 0.04 Archaeplastida
AT3G57390 AGL18 AGAMOUS-like 18 0.06 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT4G22950 GL19, AGL19 AGAMOUS-like 19 0.08 Archaeplastida
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
GSVIVT01009171001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01010221001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01015649001 No alias No description available 0.03 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01027579001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_16301 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os02g36924.1 No alias transcription factor (MADS/AGL) 0.1 Archaeplastida
LOC_Os03g03100.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os03g54170.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
LOC_Os06g06750.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os06g11330.1 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
LOC_Os06g22540.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_133455g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_15122g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_19007g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_206542g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_254338g0010 No alias transcription factor (MADS/AGL) 0.1 Archaeplastida
MA_35712g0010 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
MA_57493g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c3_33360V3.1 No alias AGAMOUS-like 44 0.02 Archaeplastida
Pp3c3_33370V3.1 No alias AGAMOUS-like 65 0.02 Archaeplastida
Solyc01g093960.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.04 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc02g084630.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc06g064840.4.1 No alias no description available(sp|f6i457|ag11c_vitvi : 172.0) 0.04 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e013738_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e014926_P001 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e015447_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e019029_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e022819_P002 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Zm00001e023825_P002 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e026007_P004 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e036159_P001 No alias transcription factor (MADS/AGL) 0.05 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!