Solyc08g081480.3.1

Description : Probable polygalacturonase OS=Vitis vinifera (sp|a7pzl3|pglr_vitvi : 726.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 57.3)

Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0002536 (SeedPlants) Phylogenetic Tree(s): OG_06_0002536_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc08g081480.3.1
Cluster	HCCA: Cluster_13

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00258260	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	Archaeplastida
AMTR_s00045p00118570	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.02	Archaeplastida
AMTR_s00107p00122980	evm_27.TU.AmTr_v1...	Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase	0.03	Archaeplastida
AT1G19170	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT2G23900	No alias	Pectin lyase-like superfamily protein	0.03	Archaeplastida
AT3G42950	No alias	Pectin lyase-like superfamily protein	0.01	Archaeplastida
AT4G23820	No alias	Pectin lyase-like superfamily protein	0.06	Archaeplastida
GSVIVT01026985001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.05	Archaeplastida
GSVIVT01028860001	No alias	Probable polygalacturonase OS=Vitis vinifera	0.05	Archaeplastida
Gb_39001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
LOC_Os01g43160.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
LOC_Os02g15690.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
LOC_Os05g50960.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.05	Archaeplastida
LOC_Os12g36810.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
MA_10430135g0020	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
MA_10431597g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_104339g0010	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
MA_10435166g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_98717g0010	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Mp7g13870.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Pp3c19_14240V3.1	No alias	Pectin lyase-like superfamily protein	0.05	Archaeplastida
Smo78556	No alias	Probable polygalacturonase OS=Vitis vinifera	0.03	Archaeplastida
Solyc07g042160.3.1	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e021051_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.02	Archaeplastida
Zm00001e023760_P001	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida
Zm00001e026646_P002	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e029809_P002	No alias	Probable polygalacturonase OS=Vitis vinifera...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000502	proteasome complex	IEP	Neighborhood
MF	GO:0003839	gamma-glutamylcyclotransferase activity	IEP	Neighborhood
MF	GO:0004421	hydroxymethylglutaryl-CoA synthase activity	IEP	Neighborhood
MF	GO:0004857	enzyme inhibitor activity	IEP	Neighborhood
MF	GO:0004860	protein kinase inhibitor activity	IEP	Neighborhood
MF	GO:0004861	cyclin-dependent protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006575	cellular modified amino acid metabolic process	IEP	Neighborhood
BP	GO:0006749	glutathione metabolic process	IEP	Neighborhood
BP	GO:0006751	glutathione catabolic process	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0007050	cell cycle arrest	IEP	Neighborhood
MF	GO:0008131	primary amine oxidase activity	IEP	Neighborhood
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Neighborhood
BP	GO:0009606	tropism	IEP	Neighborhood
BP	GO:0009894	regulation of catabolic process	IEP	Neighborhood
BP	GO:0010274	hydrotropism	IEP	Neighborhood
MF	GO:0015075	ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015696	ammonium transport	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0016638	oxidoreductase activity, acting on the CH-NH2 group of donors	IEP	Neighborhood
MF	GO:0016641	oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016840	carbon-nitrogen lyase activity	IEP	Neighborhood
MF	GO:0016842	amidine-lyase activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
MF	GO:0019210	kinase inhibitor activity	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
MF	GO:0030291	protein serine/threonine kinase inhibitor activity	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
BP	GO:0042176	regulation of protein catabolic process	IEP	Neighborhood
BP	GO:0042219	cellular modified amino acid catabolic process	IEP	Neighborhood
BP	GO:0042545	cell wall modification	IEP	Neighborhood
BP	GO:0043171	peptide catabolic process	IEP	Neighborhood
BP	GO:0044273	sulfur compound catabolic process	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0045786	negative regulation of cell cycle	IEP	Neighborhood
MF	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer	IEP	Neighborhood
BP	GO:0048523	negative regulation of cellular process	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051187	cofactor catabolic process	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
MF	GO:0098772	molecular function regulator	IEP	Neighborhood
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Neighborhood
CC	GO:1905368	peptidase complex	IEP	Neighborhood
CC	GO:1905369	endopeptidase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	150	431

External Links

No external refs found!

Solyc08g081480.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation