1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00029p00198810

AMTR_s00029p00198810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.275

Description : Cell cycle.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.SMC3/TTN7 component


Gene families : OG0005086 (Archaeplastida) Phylogenetic Tree(s): OG0005086_tree ,
OG_05_0006097 (LandPlants) Phylogenetic Tree(s): OG_05_0006097_tree ,
OG_06_0005481 (SeedPlants) Phylogenetic Tree(s): OG_06_0005481_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00198810
Cluster HCCA: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
AT2G27170 TTN7, SMC3 Structural maintenance of chromosomes (SMC) family protein 0.06 Archaeplastida
Cre10.g445650 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
GSVIVT01033181001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 Archaeplastida
LOC_Os02g04040.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.02 Archaeplastida
LOC_Os02g04050.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.03 Archaeplastida
LOC_Os02g04080.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.02 Archaeplastida
MA_10427183g0010 No alias component SMC3/TTN7 of cohesin regulator complex 0.02 Archaeplastida
MA_463997g0010 No alias Structural maintenance of chromosomes protein 3... 0.03 Archaeplastida
Mp5g09700.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.04 Archaeplastida
Pp3c24_13420V3.1 No alias Structural maintenance of chromosomes (SMC) family protein 0.02 Archaeplastida
Solyc06g073780.4.1 No alias component SMC3/TTN7 of cohesin regulator complex 0.04 Archaeplastida
Zm00001e032592_P001 No alias component SMC3/TTN7 of cohesin regulator complex 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008237 metallopeptidase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010935 SMC_hinge 522 632
IPR003395 RecF/RecN/SMC_N 2 255
No external refs found!