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  5. AMTR_s00029p00206820

AMTR_s00029p00206820 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00029.298

Description : RNA processing.RNA decay.exosome complex.associated co-factors.SUPERKILLER (SKI) regulation complex.SKI2 RNA helicase component


Gene families : OG0000933 (Archaeplastida) Phylogenetic Tree(s): OG0000933_tree ,
OG_05_0006636 (LandPlants) Phylogenetic Tree(s): OG_05_0006636_tree ,
OG_06_0006570 (SeedPlants) Phylogenetic Tree(s): OG_06_0006570_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00029p00206820
Cluster HCCA: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
AT1G59760 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.06 Archaeplastida
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Archaeplastida
AT3G46960 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Archaeplastida
Cpa|evm.model.tig00020723.108 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Cre06.g289950 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Cre11.g482483 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
GSVIVT01024809001 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
GSVIVT01032255001 No alias RNA processing.RNA decay.exosome complex.associated... 0.07 Archaeplastida
GSVIVT01037437001 No alias RNA processing.RNA decay.exosome complex.associated... 0.08 Archaeplastida
Gb_30711 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 Archaeplastida
LOC_Os02g06500.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.04 Archaeplastida
LOC_Os11g07500.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 Archaeplastida
MA_10437094g0010 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.04 Archaeplastida
Mp1g05510.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.03 Archaeplastida
Mp6g05580.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
Pp3c10_7310V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.05 Archaeplastida
Pp3c14_23340V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.04 Archaeplastida
Pp3c20_11040V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.06 Archaeplastida
Smo403447 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Smo79650 No alias RNA processing.RNA decay.exosome complex.associated... 0.03 Archaeplastida
Solyc01g103080.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 Archaeplastida
Solyc05g047520.4.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 Archaeplastida
Solyc06g005990.4.1 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.05 Archaeplastida
Solyc12g017860.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.05 Archaeplastida
Zm00001e013693_P002 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.07 Archaeplastida
Zm00001e025923_P001 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
Zm00001e036710_P004 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008026 ATP-dependent helicase activity IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000155 phosphorelay sensor kinase activity IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004133 glycogen debranching enzyme activity IEP Neighborhood
MF GO:0004134 4-alpha-glucanotransferase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004673 protein histidine kinase activity IEP Neighborhood
MF GO:0004820 glycine-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006426 glycyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006906 vesicle fusion IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016050 vesicle organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
CC GO:0016459 myosin complex IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Neighborhood
BP GO:0048284 organelle fusion IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0061025 membrane fusion IEP Neighborhood
MF GO:0061505 DNA topoisomerase II activity IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090174 organelle membrane fusion IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025696 rRNA_proc-arch_dom 924 1224
IPR011545 DEAD/DEAH_box_helicase_dom 441 587
IPR012961 Ski2_C 1248 1426
IPR001650 Helicase_C 795 869
No external refs found!