1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g008940.4.1

Solyc09g008940.4.1


Description : AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana (sp|q8vyj2|ahl1_arath : 162.0)


Gene families : OG0000405 (Archaeplastida) Phylogenetic Tree(s): OG0000405_tree ,
OG_05_0000251 (LandPlants) Phylogenetic Tree(s): OG_05_0000251_tree ,
OG_06_0000180 (SeedPlants) Phylogenetic Tree(s): OG_06_0000180_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g008940.4.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00149p00085280 evm_27.TU.AmTr_v1... AT-hook motif nuclear-localized protein 10... 0.02 Archaeplastida
AT1G63470 No alias AT hook motif DNA-binding family protein 0.02 Archaeplastida
AT3G61310 No alias AT hook motif DNA-binding family protein 0.02 Archaeplastida
AT5G51590 No alias AT hook motif DNA-binding family protein 0.02 Archaeplastida
GSVIVT01013200001 No alias AT-hook motif nuclear-localized protein 8 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01026888001 No alias AT-hook motif nuclear-localized protein 9 OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os10g42230.2 No alias AT-hook motif nuclear-localized protein 10... 0.03 Archaeplastida
MA_19947g0030 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e009148_P001 No alias AT-hook motif nuclear-localized protein 1 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e016260_P002 No alias AT-hook motif nuclear-localized protein 9 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e023546_P003 No alias AT-hook motif nuclear-localized protein 9 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e024114_P002 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e024390_P002 No alias AT-hook motif nuclear-localized protein 10... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
InterPro domains Description Start Stop
IPR005175 PPC_dom 200 313
No external refs found!