Solyc09g018230.1.1

Description : U-box domain-containing protein 16 OS=Arabidopsis thaliana (sp|q9lzw3|pub16_arath : 659.0)

Gene families : OG0000227 (Archaeplastida) Phylogenetic Tree(s): OG0000227_tree ,
OG_05_0000690 (LandPlants) Phylogenetic Tree(s): OG_05_0000690_tree ,
OG_06_0001289 (SeedPlants) Phylogenetic Tree(s): OG_06_0001289_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc09g018230.1.1
Cluster	HCCA: Cluster_225

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00153p00035720	evm_27.TU.AmTr_v1...	U-box domain-containing protein 1 OS=Medicago truncatula	0.03	Archaeplastida
AT3G07360	PUB9, ATPUB9	plant U-box 9	0.03	Archaeplastida
GSVIVT01007275001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
GSVIVT01016225001	No alias	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01024985001	No alias	U-box domain-containing protein 13 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_10627	No alias	U-box domain-containing protein 13 OS=Arabidopsis...	0.03	Archaeplastida
Gb_20805	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Gb_29276	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
LOC_Os01g60860.1	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	Archaeplastida
LOC_Os02g13960.1	No alias	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.06	Archaeplastida
Mp5g12560.1	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Smo415326	No alias	U-box domain-containing protein 1 OS=Medicago truncatula	0.04	Archaeplastida
Smo75609	No alias	U-box domain-containing protein 1 OS=Medicago truncatula	0.02	Archaeplastida
Solyc02g072080.1.1	No alias	U-box domain-containing protein 17 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e014377_P001	No alias	U-box domain-containing protein 4 OS=Oryza sativa subsp....	0.04	Archaeplastida
Zm00001e014566_P002	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
Zm00001e019429_P001	No alias	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	Archaeplastida
Zm00001e036734_P001	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008080	N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0008171	O-methyltransferase activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016407	acetyltransferase activity	IEP	Neighborhood
MF	GO:0016410	N-acyltransferase activity	IEP	Neighborhood
BP	GO:0034470	ncRNA processing	IEP	Neighborhood
BP	GO:0034660	ncRNA metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	413	451
IPR003613	Ubox_domain	282	353

External Links

No external refs found!

Solyc09g018230.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation