1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g025280.1.1

Solyc09g025280.1.1


Description : Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana (sp|o82268|lsh3_arath : 216.0)


Gene families : OG0000579 (Archaeplastida) Phylogenetic Tree(s): OG0000579_tree ,
OG_05_0000324 (LandPlants) Phylogenetic Tree(s): OG_05_0000324_tree ,
OG_06_0000239 (SeedPlants) Phylogenetic Tree(s): OG_06_0000239_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g025280.1.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT2G31160 LSH3 Protein of unknown function (DUF640) 0.05 Archaeplastida
AT2G42610 LSH10 Protein of unknown function (DUF640) 0.07 Archaeplastida
AT3G04510 LSH2 Protein of unknown function (DUF640) 0.11 Archaeplastida
AT3G23290 LSH4 No description available 0.08 Archaeplastida
AT4G18610 LSH9 Protein of unknown function (DUF640) 0.04 Archaeplastida
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.1 Archaeplastida
GSVIVT01021215001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.02 Archaeplastida
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.03 Archaeplastida
Gb_15426 No alias Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_36840 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
Gb_39186 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
LOC_Os01g61310.1 No alias Protein G1-like7 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os02g41460.1 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os02g56610.1 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.06 Archaeplastida
LOC_Os04g43580.2 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os05g28040.1 No alias Protein G1-like9 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
Pp3c20_17990V3.1 No alias Protein of unknown function (DUF640) 0.02 Archaeplastida
Solyc05g055020.4.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... 0.04 Archaeplastida
Solyc10g008000.1.1 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.04 Archaeplastida
Zm00001e004570_P001 No alias Protein G1-like4 OS=Oryza sativa subsp. indica... 0.06 Archaeplastida
Zm00001e012687_P001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.05 Archaeplastida
Zm00001e013711_P001 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
Zm00001e019403_P001 No alias Protein G1-like7 OS=Oryza sativa subsp. indica... 0.05 Archaeplastida
Zm00001e023022_P001 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.03 Archaeplastida
Zm00001e028824_P001 No alias Protein G1-like8 OS=Oryza sativa subsp. indica... 0.05 Archaeplastida
Zm00001e032784_P001 No alias Protein G1 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e037775_P001 No alias Protein G1-like2 OS=Oryza sativa subsp. indica... 0.09 Archaeplastida
Zm00001e041238_P001 No alias Protein G1-like3 OS=Oryza sativa subsp. indica... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006936 ALOG_dom 22 142
No external refs found!