Description : Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica (sp|q6zk48|slu7_orysj : 728.0)
Gene families : OG0004562 (Archaeplastida) Phylogenetic Tree(s): OG0004562_tree ,
OG_05_0005673 (LandPlants) Phylogenetic Tree(s): OG_05_0005673_tree ,
OG_06_0006060 (SeedPlants) Phylogenetic Tree(s): OG_06_0006060_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc09g072570.3.1 | |
Cluster | HCCA: Cluster_8 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G65660 | SMP1 | Pre-mRNA splicing Prp18-interacting factor | 0.05 | Archaeplastida | |
AT4G37120 | SMP2 | Pre-mRNA splicing Prp18-interacting factor | 0.07 | Archaeplastida | |
Cpa|evm.model.tig00000217.42 | No alias | Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana | 0.03 | Archaeplastida | |
GSVIVT01027813001 | No alias | Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica | 0.05 | Archaeplastida | |
LOC_Os08g03390.1 | No alias | Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... | 0.04 | Archaeplastida | |
Mp1g12350.1 | No alias | Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... | 0.06 | Archaeplastida | |
Zm00001e029263_P001 | No alias | Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... | 0.03 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000350 | generation of catalytic spliceosome for second transesterification step | IEP | Neighborhood |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Neighborhood |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Neighborhood |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Neighborhood |
BP | GO:0000469 | cleavage involved in rRNA processing | IEP | Neighborhood |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
CC | GO:0005681 | spliceosomal complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Neighborhood |
BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Neighborhood |
BP | GO:0006396 | RNA processing | IEP | Neighborhood |
BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
BP | GO:0006476 | protein deacetylation | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
CC | GO:0008023 | transcription elongation factor complex | IEP | Neighborhood |
BP | GO:0008380 | RNA splicing | IEP | Neighborhood |
BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
BP | GO:0016570 | histone modification | IEP | Neighborhood |
BP | GO:0016575 | histone deacetylation | IEP | Neighborhood |
CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Neighborhood |
MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | Neighborhood |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:0035601 | protein deacylation | IEP | Neighborhood |
CC | GO:0044428 | nuclear part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | Neighborhood |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | Neighborhood |
BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | Neighborhood |
BP | GO:0098732 | macromolecule deacylation | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR021715 | Slu7 | 136 | 405 |
No external refs found! |