Solyc09g072570.3.1


Description : Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica (sp|q6zk48|slu7_orysj : 728.0)


Gene families : OG0004562 (Archaeplastida) Phylogenetic Tree(s): OG0004562_tree ,
OG_05_0005673 (LandPlants) Phylogenetic Tree(s): OG_05_0005673_tree ,
OG_06_0006060 (SeedPlants) Phylogenetic Tree(s): OG_06_0006060_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g072570.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AT1G65660 SMP1 Pre-mRNA splicing Prp18-interacting factor 0.05 Archaeplastida
AT4G37120 SMP2 Pre-mRNA splicing Prp18-interacting factor 0.07 Archaeplastida
Cpa|evm.model.tig00000217.42 No alias Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01027813001 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica 0.05 Archaeplastida
LOC_Os08g03390.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Mp1g12350.1 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.06 Archaeplastida
Zm00001e029263_P001 No alias Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp.... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR021715 Slu7 136 405
No external refs found!