Solyc09g082830.4.1


Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g082830.4.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.05 Archaeplastida
AMTR_s00024p00238500 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
AMTR_s00058p00069070 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
AMTR_s00122p00122810 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.09 Archaeplastida
AT1G31290 AGO3 ARGONAUTE 3 0.04 Archaeplastida
AT1G69440 AGO7, ZIP Argonaute family protein 0.02 Archaeplastida
AT2G27040 AGO4, OCP11 Argonaute family protein 0.03 Archaeplastida
AT2G27880 AGO5 Argonaute family protein 0.03 Archaeplastida
AT5G21030 No alias PAZ domain-containing protein / piwi domain-containing protein 0.03 Archaeplastida
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.08 Archaeplastida
ChrSy.fgenesh.mRNA.6 No alias no hits & (original description: none) 0.04 Archaeplastida
GSVIVT01012490001 No alias Protein argonaute 7 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01015464001 No alias Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.07 Archaeplastida
GSVIVT01030512001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01031430001 No alias Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
LOC_Os01g16870.3 No alias siRNA-integrating factor (AGO) 0.02 Archaeplastida
LOC_Os02g40320.1 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g58490.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
LOC_Os03g33650.1 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os04g06770.2 No alias siRNA-integrating factor (AGO) 0.04 Archaeplastida
LOC_Os04g47870.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida
LOC_Os06g39640.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.06 Archaeplastida
LOC_Os06g51310.2 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.12 Archaeplastida
LOC_Os07g09020.1 No alias Protein argonaute 14 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_10427420g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
MA_10428886g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_123150g0010 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.01 Archaeplastida
MA_14457g0010 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_14457g0020 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
MA_158278g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_594g0010 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Mp1g18110.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.06 Archaeplastida
Mp6g20400.1 No alias siRNA-integrating factor (AGO) 0.02 Archaeplastida
Pp3c18_9600V3.1 No alias Argonaute family protein 0.02 Archaeplastida
Pp3c19_20670V3.1 No alias Argonaute family protein 0.03 Archaeplastida
Zm00001e002044_P002 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e013340_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e032609_P001 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
Zm00001e037347_P002 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
Zm00001e041452_P004 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000075 cell cycle checkpoint IEP Neighborhood
BP GO:0000077 DNA damage checkpoint IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031570 DNA integrity checkpoint IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0045786 negative regulation of cell cycle IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003100 PAZ_dom 340 462
IPR032472 ArgoL2 472 518
IPR032473 Argonaute_Mid_dom 529 606
IPR014811 ArgoL1 280 329
IPR003165 Piwi 621 940
IPR032474 Argonaute_N 136 270
No external refs found!