1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc09g091880.4.1

Solyc09g091880.4.1


Description : G2-like GARP transcription factor. transcription factor (PHR1)


Gene families : OG0000027 (Archaeplastida) Phylogenetic Tree(s): OG0000027_tree ,
OG_05_0000069 (LandPlants) Phylogenetic Tree(s): OG_05_0000069_tree ,
OG_06_0000042 (SeedPlants) Phylogenetic Tree(s): OG_06_0000042_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc09g091880.4.1
Cluster HCCA: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00094p00028710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
AT3G04450 No alias Homeodomain-like superfamily protein 0.03 Archaeplastida
GSVIVT01030315001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
GSVIVT01032776001 No alias Putative Myb family transcription factor At1g14600... 0.07 Archaeplastida
GSVIVT01036717001 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Gb_05469 No alias G2-like GARP transcription factor 0.03 Archaeplastida
Gb_08427 No alias G2-like GARP transcription factor 0.03 Archaeplastida
LOC_Os03g20900.1 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_138039g0010 No alias G2-like GARP transcription factor 0.03 Archaeplastida
MA_201937g0010 No alias G2-like GARP transcription factor 0.04 Archaeplastida
MA_201937g0020 No alias Myb-related protein 1 OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_8183372g0010 No alias G2-like GARP transcription factor 0.02 Archaeplastida
Smo405704 No alias RNA biosynthesis.transcriptional activation.MYB... 0.04 Archaeplastida
Smo414222 No alias RNA biosynthesis.transcriptional activation.MYB... 0.03 Archaeplastida
Smo441930 No alias RNA biosynthesis.transcriptional activation.MYB... 0.06 Archaeplastida
Zm00001e030689_P002 No alias G2-like GARP transcription factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
InterPro domains Description Start Stop
IPR001005 SANT/Myb 54 104
IPR025756 Myb_CC_LHEQLE 148 195
No external refs found!