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  5. Solyc10g005590.4.1

Solyc10g005590.4.1


Description : component RNPS1 of RNA quality control Exon Junction complex


Gene families : OG0003818 (Archaeplastida) Phylogenetic Tree(s): OG0003818_tree ,
OG_05_0002920 (LandPlants) Phylogenetic Tree(s): OG_05_0002920_tree ,
OG_06_0004355 (SeedPlants) Phylogenetic Tree(s): OG_06_0004355_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g005590.4.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00150630 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.06 Archaeplastida
AT1G16610 RNPS1, SR45 arginine/serine-rich 45 0.07 Archaeplastida
Cpa|evm.model.tig00021222.7 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
Cre03.g164950 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
GSVIVT01020424001 No alias RNA processing.RNA quality control Exon Junction complex... 0.05 Archaeplastida
Gb_20779 No alias component RNPS1 of RNA quality control Exon Junction complex 0.07 Archaeplastida
LOC_Os01g72890.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.05 Archaeplastida
MA_10428760g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_3280g0020 No alias component RNPS1 of RNA quality control Exon Junction complex 0.02 Archaeplastida
Mp4g11580.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Zm00001e018566_P001 No alias component RNPS1 of RNA quality control Exon Junction complex 0.1 Archaeplastida
Zm00001e028289_P001 No alias component RNPS1 of RNA quality control Exon Junction complex 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0010498 proteasomal protein catabolic process IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0030163 protein catabolic process IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 116 184
No external refs found!