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  5. Solyc10g009330.3.1

Solyc10g009330.3.1


Description : RS31/40/41 RNA splicing factor


Gene families : OG0001617 (Archaeplastida) Phylogenetic Tree(s): OG0001617_tree ,
OG_05_0001638 (LandPlants) Phylogenetic Tree(s): OG_05_0001638_tree ,
OG_06_0001180 (SeedPlants) Phylogenetic Tree(s): OG_06_0001180_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g009330.3.1
Cluster HCCA: Cluster_243

Target Alias Description ECC score Gene Family Method Actions
AT5G52040 At-RS41, RS41, ATRSP41 RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
MA_10434350g0010 No alias RS31/40/41 RNA splicing factor 0.03 Archaeplastida
MA_10436130g0020 No alias RS31/40/41 RNA splicing factor 0.02 Archaeplastida
MA_111545g0020 No alias RS31/40/41 RNA splicing factor 0.03 Archaeplastida
Mp8g04570.1 No alias RS31/40/41 RNA splicing factor 0.02 Archaeplastida
Zm00001e013507_P001 No alias RS31/40/41 RNA splicing factor 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 3 33
IPR000504 RRM_dom 68 130
No external refs found!