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  5. Solyc10g011720.1.1

Solyc10g011720.1.1


Description : DNA-directed RNA polymerase subunit beta OS=Solanum lycopersicum (sp|q2mib0|rpoc2_sollc : 226.0)


Gene families : OG0000707 (Archaeplastida) Phylogenetic Tree(s): OG0000707_tree ,
OG_05_0001017 (LandPlants) Phylogenetic Tree(s): OG_05_0001017_tree ,
OG_06_0000818 (SeedPlants) Phylogenetic Tree(s): OG_06_0000818_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g011720.1.1

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g24614.1 No alias RpoC1 core component plastid-encoded RNA polymerase 0.02 Archaeplastida
LOC_Os04g16830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.03 Archaeplastida
Solyc01g017380.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Lemna minor... 0.02 Archaeplastida
Solyc07g021220.3.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 Archaeplastida
Solyc07g021290.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.01 Archaeplastida
Solyc08g014390.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.02 Archaeplastida
Solyc08g028910.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Solanum... 0.02 Archaeplastida
Solyc12g062567.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.04 Archaeplastida
Solyc12g096910.1.1 No alias DNA-directed RNA polymerase subunit beta OS=Nicotiana... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005047 signal recognition particle binding IEP Neighborhood
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006612 protein targeting to membrane IEP Neighborhood
BP GO:0006613 cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008312 7S RNA binding IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
MF GO:0043021 ribonucleoprotein complex binding IEP Neighborhood
BP GO:0045047 protein targeting to ER IEP Neighborhood
CC GO:0048500 signal recognition particle IEP Neighborhood
BP GO:0070972 protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Neighborhood
BP GO:0072657 protein localization to membrane IEP Neighborhood
BP GO:0090150 establishment of protein localization to membrane IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!