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  5. AMTR_s00030p00199250

AMTR_s00030p00199250 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.136

Description : RNA biosynthesis.RNA polymerase II-dependent transcription.SPT4/5 transcription elongation factor complex.SPT4 component


Gene families : OG0004688 (Archaeplastida) Phylogenetic Tree(s): OG0004688_tree ,
OG_05_0006526 (LandPlants) Phylogenetic Tree(s): OG_05_0006526_tree ,
OG_06_0007493 (SeedPlants) Phylogenetic Tree(s): OG_06_0007493_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00199250
Cluster HCCA: Cluster_100

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001130.6 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005048 signal sequence binding IEP Neighborhood
CC GO:0005875 microtubule associated complex IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006621 protein retention in ER lumen IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0032507 maintenance of protein location in cell IEP Neighborhood
MF GO:0033218 amide binding IEP Neighborhood
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Neighborhood
MF GO:0042277 peptide binding IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0045185 maintenance of protein location IEP Neighborhood
MF GO:0046923 ER retention sequence binding IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051651 maintenance of location in cell IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0072595 maintenance of protein localization in organelle IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR022800 Spt4/RpoE2_Znf 15 78
No external refs found!