Solyc10g044965.1.1

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0088577 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g044965.1.1
Cluster	HCCA: Cluster_14

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00217560	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
AMTR_s00021p00254030	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00071p00198520	evm_27.TU.AmTr_v1...	Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana	0.05	Archaeplastida
AMTR_s00071p00198970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
AMTR_s00089p00081270	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
AMTR_s00109p00015260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.05	Archaeplastida
AMTR_s00140p00045380	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
AT1G24260	AGL9, SEP3	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.04	Archaeplastida
AT1G71692	XAL1, AGL12	AGAMOUS-like 12	0.04	Archaeplastida
AT2G22630	AGL17	AGAMOUS-like 17	0.03	Archaeplastida
AT2G42830	SHP2, AGL5	K-box region and MADS-box transcription factor family protein	0.05	Archaeplastida
AT2G45650	AGL6	AGAMOUS-like 6	0.03	Archaeplastida
AT3G02310	AGL4, SEP2	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G30260	AGL79	AGAMOUS-like 79	0.04	Archaeplastida
AT3G54340	AP3, ATAP3	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT3G57390	AGL18	AGAMOUS-like 18	0.06	Archaeplastida
AT3G58780	AGL1, SHP1	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT4G11880	AGL14	AGAMOUS-like 14	0.07	Archaeplastida
AT4G18960	AG	K-box region and MADS-box transcription factor family protein	0.03	Archaeplastida
AT5G23260	AGL32, TT16, ABS	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT5G60440	AGL62	AGAMOUS-like 62	0.04	Archaeplastida
GSVIVT01006592001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01008560001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01008806001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01009815001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01012110001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01015649001	No alias	No description available	0.03	Archaeplastida
GSVIVT01025945001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01026207001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
GSVIVT01027577001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01027579001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
GSVIVT01033253001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.06	Archaeplastida
GSVIVT01035477001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
GSVIVT01037026001	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.04	Archaeplastida
Gb_03068	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_05359	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Gb_16301	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Gb_28337	No alias	MADS-box transcription factor 6 OS=Oryza sativa subsp....	0.02	Archaeplastida
LOC_Os02g52340.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
LOC_Os03g08754.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os03g11614.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
LOC_Os06g23950.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
LOC_Os06g23980.1	No alias	MADS-box transcription factor 27 OS=Oryza sativa subsp....	0.05	Archaeplastida
LOC_Os10g39130.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_10434339g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.05	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
MA_333471g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_5917g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_629987g0010	No alias	MADS-box protein GGM13 OS=Gnetum gnemon...	0.05	Archaeplastida
MA_63212g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_78010g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_9382435g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_9841429g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Pp3c17_24040V3.1	No alias	AGAMOUS-like 66	0.02	Archaeplastida
Smo113962	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Smo121275	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.03	Archaeplastida
Smo69980	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
Solyc01g093960.3.1	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
Solyc04g005320.3.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Solyc10g080030.2.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Solyc11g005120.3.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e000846_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e003667_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e006950_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e010125_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e015728_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e016529_P004	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.05	Archaeplastida
Zm00001e026007_P004	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e027031_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e027034_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e029170_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e030187_P001	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e030373_P001	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e031267_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e034629_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Zm00001e038716_P004	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e039774_P001	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0005506	iron ion binding	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
BP	GO:0008152	metabolic process	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	84	169

External Links

No external refs found!

Solyc10g044965.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation