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  5. AMTR_s00030p00236350

AMTR_s00030p00236350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00030.200

Description : RNA processing.RNA decay.deadenylation-dependent mechanism.mRNA deadenylation.CCR4-NOT complex.CAF1 deadenylase component


Gene families : OG0000981 (Archaeplastida) Phylogenetic Tree(s): OG0000981_tree ,
OG_05_0001237 (LandPlants) Phylogenetic Tree(s): OG_05_0001237_tree ,
OG_06_0001421 (SeedPlants) Phylogenetic Tree(s): OG_06_0001421_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00030p00236350
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT3G44260 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.07 Archaeplastida
AT5G22250 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.07 Archaeplastida
GSVIVT01035897001 No alias Probable CCR4-associated factor 1 homolog 10... 0.03 Archaeplastida
Gb_19103 No alias deadenylase component CAF1 of CCR4-NOT complex 0.04 Archaeplastida
LOC_Os04g58810.1 No alias Probable CCR4-associated factor 1 homolog 11... 0.06 Archaeplastida
LOC_Os09g24990.2 No alias Probable CCR4-associated factor 1 homolog 7... 0.03 Archaeplastida
MA_127412g0020 No alias Probable CCR4-associated factor 1 homolog 7... 0.05 Archaeplastida
MA_205414g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.05 Archaeplastida
MA_2937g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.05 Archaeplastida
MA_5937864g0010 No alias Probable CCR4-associated factor 1 homolog 7... 0.07 Archaeplastida
Pp3c21_18060V3.1 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.04 Archaeplastida
Solyc06g074030.1.1 No alias deadenylase component CAF1 of CCR4-NOT complex 0.08 Archaeplastida
Solyc11g068770.1.1 No alias deadenylase component CAF1 of CCR4-NOT complex 0.07 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Neighborhood
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 13 245
No external refs found!