Solyc10g078540.3.1

Description : core component Gar1 of H/ACA small nucleolar ribonucleoprotein (snoRNP) RNA pseudouridylation complex

Gene families : OG0005231 (Archaeplastida) Phylogenetic Tree(s): OG0005231_tree ,
OG_05_0006383 (LandPlants) Phylogenetic Tree(s): OG_05_0006383_tree ,
OG_06_0009370 (SeedPlants) Phylogenetic Tree(s): OG_06_0009370_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc10g078540.3.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
AT3G03920	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.29	Archaeplastida
Cpa\|evm.model.tig00000310.30	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.04	Archaeplastida
Cre13.g567850	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.03	Archaeplastida
GSVIVT01033401001	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.36	Archaeplastida
Gb_17575	No alias	core component Gar1 of H/ACA small nucleolar...	0.01	Archaeplastida
Gb_24533	No alias	core component Gar1 of H/ACA small nucleolar...	0.09	Archaeplastida
LOC_Os11g37080.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.15	Archaeplastida
Mp5g08210.1	No alias	core component Gar1 of H/ACA small nucleolar...	0.05	Archaeplastida
Pp3c25_15020V3.1	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.03	Archaeplastida
Pp3c5_28430V3.1	No alias	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	0.23	Archaeplastida
Smo266974	No alias	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.12	Archaeplastida
Zm00001e011244_P001	No alias	core component Gar1 of H/ACA small nucleolar...	0.05	Archaeplastida
Zm00001e024449_P002	No alias	core component Gar1 of H/ACA small nucleolar...	0.09	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003697	single-stranded DNA binding	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003735	structural constituent of ribosome	IEP	Neighborhood
MF	GO:0005198	structural molecule activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005840	ribosome	IEP	Neighborhood
BP	GO:0006412	translation	IEP	Neighborhood
BP	GO:0006518	peptide metabolic process	IEP	Neighborhood
MF	GO:0008097	5S rRNA binding	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009059	macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0019538	protein metabolic process	IEP	Neighborhood
MF	GO:0019843	rRNA binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0043043	peptide biosynthetic process	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043228	non-membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0043604	amide biosynthetic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044267	cellular protein metabolic process	IEP	Neighborhood
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044444	cytoplasmic part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Neighborhood
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
CC	GO:1990904	ribonucleoprotein complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007504	H/ACA_rnp_Gar1/Naf1	31	137

External Links

No external refs found!

Solyc10g078540.3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation