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  4. Sequence
  5. Solyc10g078990.1.1

Solyc10g078990.1.1


Description : C2H2 zinc finger transcription factor


Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0000307 (SeedPlants) Phylogenetic Tree(s): OG_06_0000307_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g078990.1.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00212840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00024p00186840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.02 Archaeplastida
AMTR_s00057p00086480 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
AMTR_s00079p00169240 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00088p00145510 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
AMTR_s00124p00105750 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00138p00067840 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AMTR_s00150p00049910 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
AT3G09290 TAC1 telomerase activator1 0.05 Archaeplastida
AT3G53820 No alias C2H2 and C2HC zinc fingers superfamily protein 0.03 Archaeplastida
AT5G25160 ZFP3 zinc finger protein 3 0.05 Archaeplastida
GSVIVT01011610001 No alias No description available 0.03 Archaeplastida
GSVIVT01011868001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01013168001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.03 Archaeplastida
GSVIVT01016493001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
GSVIVT01027720001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.04 Archaeplastida
GSVIVT01031007001 No alias RNA biosynthesis.transcriptional activation.C2H2 zinc... 0.05 Archaeplastida
Gb_04808 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_21168 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Gb_26860 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Gb_27734 No alias Zinc finger protein 10 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_27735 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os01g32920.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os03g41110.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os04g50070.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os05g20930.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os06g10470.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os07g23450.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os07g40300.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os08g44190.1 No alias C2H2 zinc finger transcription factor 0.02 Archaeplastida
LOC_Os09g26200.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os09g26210.1 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
LOC_Os09g27320.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
LOC_Os09g38610.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
MA_10430024g0010 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
MA_2800g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
MA_54742g0010 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Pp3c17_17640V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c20_10790V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c23_800V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Pp3c6_19230V3.1 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Archaeplastida
Solyc05g009170.3.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Solyc05g009180.1.1 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Solyc06g061160.1.1 No alias C2H2 zinc finger transcription factor 0.03 Archaeplastida
Zm00001e009853_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e009854_P001 No alias C2H2 zinc finger transcription factor 0.05 Archaeplastida
Zm00001e022212_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e025728_P002 No alias Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e030783_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e034092_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e036220_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida
Zm00001e036816_P001 No alias C2H2 zinc finger transcription factor 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
MF GO:0005506 iron ion binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0010333 terpene synthase activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016835 carbon-oxygen lyase activity IEP Neighborhood
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!