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  5. Solyc10g081020.2.1

Solyc10g081020.2.1


Description : histone chaperone (SPT6). component SPT6 of SPT6-IWS1 transcription elongation complex


Gene families : OG0003491 (Archaeplastida) Phylogenetic Tree(s): OG0003491_tree ,
OG_05_0005087 (LandPlants) Phylogenetic Tree(s): OG_05_0005087_tree ,
OG_06_0005020 (SeedPlants) Phylogenetic Tree(s): OG_06_0005020_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g081020.2.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00038p00136890 evm_27.TU.AmTr_v1... Chromatin organisation.histone chaperone... 0.04 Archaeplastida
AT1G65440 GTB1 global transcription factor group B1 0.11 Archaeplastida
Cpa|evm.model.tig00001486.8 No alias Chromatin organisation.histone chaperone... 0.03 Archaeplastida
Cre09.g403182 No alias Chromatin organisation.histone chaperone... 0.04 Archaeplastida
GSVIVT01012381001 No alias Chromatin organisation.histone chaperone... 0.01 Archaeplastida
GSVIVT01025815001 No alias Chromatin organisation.histone chaperone... 0.12 Archaeplastida
Gb_29261 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.02 Archaeplastida
LOC_Os05g41510.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.07 Archaeplastida
MA_13648g0020 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.06 Archaeplastida
Mp2g25720.1 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.09 Archaeplastida
Pp3c5_23930V3.1 No alias global transcription factor group B1 0.07 Archaeplastida
Pp3c5_24480V3.1 No alias global transcription factor group B1 0.05 Archaeplastida
Smo164675 No alias Chromatin organisation.histone chaperone... 0.07 Archaeplastida
Zm00001e032018_P003 No alias histone chaperone (SPT6). component SPT6 of SPT6-IWS1... 0.09 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
BP GO:0000272 polysaccharide catabolic process IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016160 amylase activity IEP Neighborhood
MF GO:0016161 beta-amylase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0031491 nucleosome binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR028083 Spt6_acidic_N_dom 36 129
IPR032706 Spt6_HHH 911 1012
IPR028231 Spt6_YqgF 752 907
IPR035420 Spt6_SH2 1229 1446
No external refs found!