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  5. Solyc10g083590.2.1

Solyc10g083590.2.1


Description : component Pcf11 of Cleavage Factor II (CF-IIm) complex


Gene families : OG0001781 (Archaeplastida) Phylogenetic Tree(s): OG0001781_tree ,
OG_05_0002038 (LandPlants) Phylogenetic Tree(s): OG_05_0002038_tree ,
OG_06_0001962 (SeedPlants) Phylogenetic Tree(s): OG_06_0001962_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g083590.2.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00210200 evm_27.TU.AmTr_v1... RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.11 Archaeplastida
AT2G36480 No alias ENTH/VHS family protein 0.04 Archaeplastida
Cpa|evm.model.tig00000396.26 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.01 Archaeplastida
GSVIVT01012646001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.12 Archaeplastida
GSVIVT01033783001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage Factor... 0.1 Archaeplastida
Gb_21315 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.05 Archaeplastida
Gb_26268 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.07 Archaeplastida
LOC_Os08g08830.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.09 Archaeplastida
LOC_Os09g39270.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.09 Archaeplastida
MA_10040687g0010 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 Archaeplastida
MA_10433250g0020 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.03 Archaeplastida
MA_132868g0010 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.06 Archaeplastida
Mp8g18940.1 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.04 Archaeplastida
Pp3c16_6360V3.1 No alias PCF11P-similar protein 4 0.06 Archaeplastida
Pp3c16_6390V3.1 No alias PCF11P-similar protein 4 0.07 Archaeplastida
Zm00001e009485_P001 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.12 Archaeplastida
Zm00001e021648_P002 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.12 Archaeplastida
Zm00001e033620_P001 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.12 Archaeplastida
Zm00001e039948_P002 No alias component Pcf11 of Cleavage Factor II (CF-IIm) complex 0.12 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016255 attachment of GPI anchor to protein IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0016791 phosphatase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043543 protein acylation IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
MF GO:0060090 molecular adaptor activity IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 176 230
No external refs found!