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  5. Solyc10g085410.3.1

Solyc10g085410.3.1


Description : Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 696.0)


Gene families : OG0005393 (Archaeplastida) Phylogenetic Tree(s): OG0005393_tree ,
OG_05_0006070 (LandPlants) Phylogenetic Tree(s): OG_05_0006070_tree ,
OG_06_0007390 (SeedPlants) Phylogenetic Tree(s): OG_06_0007390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g085410.3.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00051p00095080 evm_27.TU.AmTr_v1... Cactin OS=Arabidopsis thaliana 0.05 Archaeplastida
AT1G03910 No alias EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13... 0.03 Archaeplastida
Cpa|evm.model.tig00021493.13 No alias Cactin OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre09.g398650 No alias Cactin OS=Arabidopsis thaliana 0.04 Archaeplastida
LOC_Os03g58590.1 No alias Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 644.0) 0.11 Archaeplastida
Mp1g18180.1 No alias Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 645.0) 0.03 Archaeplastida
Pp3c27_420V3.1 No alias No annotation 0.04 Archaeplastida
Smo107633 No alias Cactin OS=Arabidopsis thaliana 0.07 Archaeplastida
Smo403675 No alias Cactin OS=Arabidopsis thaliana 0.01 Archaeplastida
Zm00001e006029_P001 No alias Cactin OS=Arabidopsis thaliana (sp|f4i2j8|catin_arath : 708.0) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR019134 Cactin_C 556 680
IPR018816 Cactin_central 201 398
No external refs found!