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  5. Solyc10g086020.3.1

Solyc10g086020.3.1


Description : component RPS23 of SSU proteome


Gene families : OG0001653 (Archaeplastida) Phylogenetic Tree(s): OG0001653_tree ,
OG_05_0002025 (LandPlants) Phylogenetic Tree(s): OG_05_0002025_tree ,
OG_06_0002565 (SeedPlants) Phylogenetic Tree(s): OG_06_0002565_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g086020.3.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00204160 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
AT3G09680 No alias Ribosomal protein S12/S23 family protein 0.03 Archaeplastida
AT5G02960 No alias Ribosomal protein S12/S23 family protein 0.48 Archaeplastida
Cpa|evm.model.tig00001264.27 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.26 Archaeplastida
Cre12.g504200 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.35 Archaeplastida
GSVIVT01016341001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.24 Archaeplastida
GSVIVT01025120001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.3 Archaeplastida
GSVIVT01025626001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.17 Archaeplastida
Gb_02361 No alias component RPS23 of SSU proteome 0.2 Archaeplastida
Gb_36570 No alias component RPS23 of SSU proteome 0.2 Archaeplastida
LOC_Os01g61814.1 No alias component RPS23 of SSU proteome 0.35 Archaeplastida
LOC_Os03g60400.1 No alias component RPS23 of SSU proteome 0.37 Archaeplastida
MA_10436470g0020 No alias component RPS23 of SSU proteome 0.33 Archaeplastida
MA_19871g0020 No alias component RPS23 of SSU proteome 0.17 Archaeplastida
MA_9043057g0010 No alias component RPS23 of SSU proteome 0.17 Archaeplastida
Mp2g08680.1 No alias component RPS23 of SSU proteome 0.49 Archaeplastida
Pp3c11_11070V3.1 No alias Ribosomal protein S12/S23 family protein 0.33 Archaeplastida
Pp3c12_25120V3.1 No alias Ribosomal protein S12/S23 family protein 0.24 Archaeplastida
Pp3c2_24130V3.1 No alias Ribosomal protein S12/S23 family protein 0.4 Archaeplastida
Pp3c4_3120V3.1 No alias Ribosomal protein S12/S23 family protein 0.26 Archaeplastida
Pp3c7_14200V3.1 No alias Ribosomal protein S12/S23 family protein 0.32 Archaeplastida
Smo145246 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 Archaeplastida
Zm00001e006170_P001 No alias component RPS23 of SSU proteome 0.39 Archaeplastida
Zm00001e011770_P001 No alias component RPS23 of SSU proteome 0.14 Archaeplastida
Zm00001e019377_P001 No alias component RPS23 of SSU proteome 0.4 Archaeplastida
Zm00001e027265_P001 No alias component RPS23 of SSU proteome 0.25 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 31 141
No external refs found!