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  5. Solyc10g086150.2.1

Solyc10g086150.2.1


Description : 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris (sp|q08937|roc2_nicsy : 322.0)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000810 (LandPlants) Phylogenetic Tree(s): OG_05_0000810_tree ,
OG_06_0004328 (SeedPlants) Phylogenetic Tree(s): OG_06_0004328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g086150.2.1
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00202090 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00044p00073410 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 6, chloroplastic... 0.03 Archaeplastida
AMTR_s00061p00032260 evm_27.TU.AmTr_v1... RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00061p00142700 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00148p00072380 evm_27.TU.AmTr_v1... 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.04 Archaeplastida
AMTR_s00166p00060690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
AT1G73530 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.04 Archaeplastida
AT2G37220 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 Archaeplastida
AT3G52380 PDE322, CP33 chloroplast RNA-binding protein 33 0.11 Archaeplastida
AT3G53460 CP29 chloroplast RNA-binding protein 29 0.04 Archaeplastida
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.03 Archaeplastida
AT4G24770 ATRBP31, CP31,... 31-kDa RNA binding protein 0.13 Archaeplastida
AT5G61030 GR-RBP3 glycine-rich RNA-binding protein 3 0.03 Archaeplastida
Cre01.g032300 No alias No description available 0.03 Archaeplastida
GSVIVT01007596001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
GSVIVT01022600001 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris 0.03 Archaeplastida
GSVIVT01025697001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.09 Archaeplastida
GSVIVT01027917001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris 0.04 Archaeplastida
GSVIVT01032361001 No alias RNA processing.organelle machineries.RNA... 0.06 Archaeplastida
Gb_09687 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.09 Archaeplastida
Gb_29798 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.09 Archaeplastida
Gb_37522 No alias Organelle RRM domain-containing protein 1, chloroplastic... 0.08 Archaeplastida
Gb_39591 No alias Organelle RRM domain-containing protein 6, chloroplastic... 0.05 Archaeplastida
LOC_Os02g57010.1 No alias 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.05 Archaeplastida
LOC_Os03g25960.1 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.19 Archaeplastida
LOC_Os07g06450.1 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os08g44290.1 No alias RNA editing factor (CP31) 0.03 Archaeplastida
LOC_Os09g39180.1 No alias RNA editing factor (CP31) 0.04 Archaeplastida
LOC_Os12g31800.1 No alias RNA editing factor (ORRM) 0.02 Archaeplastida
MA_320479g0010 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.08 Archaeplastida
MA_367032g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp2g13800.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.12 Archaeplastida
Mp8g03420.1 No alias 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana... 0.06 Archaeplastida
Pp3c12_9890V3.1 No alias chloroplast RNA-binding protein 29 0.03 Archaeplastida
Pp3c8_16740V3.1 No alias chloroplast RNA-binding protein 29 0.1 Archaeplastida
Zm00001e001824_P002 No alias RNA-binding protein CP29B, chloroplastic OS=Arabidopsis... 0.07 Archaeplastida
Zm00001e003947_P001 No alias RNA editing factor (CP31) 0.14 Archaeplastida
Zm00001e010844_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.06 Archaeplastida
Zm00001e022086_P002 No alias RNA editing factor (CP31) 0.15 Archaeplastida
Zm00001e032835_P001 No alias RNA-binding protein CP33, chloroplastic OS=Arabidopsis... 0.16 Archaeplastida
Zm00001e033465_P001 No alias RNA editing factor (CP31) 0.13 Archaeplastida
Zm00001e035630_P001 No alias 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana... 0.04 Archaeplastida
Zm00001e040294_P001 No alias RNA editing factor (ORRM) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006414 translational elongation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Neighborhood
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 208 278
IPR000504 RRM_dom 96 166
No external refs found!