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  5. Solyc10g086400.2.1

Solyc10g086400.2.1


Description : mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP trafficking complex


Gene families : OG0001027 (Archaeplastida) Phylogenetic Tree(s): OG0001027_tree ,
OG_05_0000803 (LandPlants) Phylogenetic Tree(s): OG_05_0000803_tree ,
OG_06_0000994 (SeedPlants) Phylogenetic Tree(s): OG_06_0000994_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g086400.2.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00035940 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.05 Archaeplastida
AT5G02530 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000194.40 No alias RNA processing.messenger ribonucleoprotein particle... 0.02 Archaeplastida
GSVIVT01025009001 No alias RNA processing.messenger ribonucleoprotein particle... 0.03 Archaeplastida
MA_102122g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c25_13340V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Zm00001e009369_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.02 Archaeplastida
Zm00001e033165_P001 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0004000 adenosine deaminase activity IEP Neighborhood
MF GO:0004455 ketol-acid reductoisomerase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030145 manganese ion binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0031072 heat shock protein binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
MF GO:0051082 unfolded protein binding IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 87 155
IPR025715 FoP_C 180 234
No external refs found!