Solyc11g006320.2.1

Description : ubiquitin protease (USP7). deubiquitinase (UBP12-13)

Gene families : OG0000966 (Archaeplastida) Phylogenetic Tree(s): OG0000966_tree ,
OG_05_0001134 (LandPlants) Phylogenetic Tree(s): OG_05_0001134_tree ,
OG_06_0001034 (SeedPlants) Phylogenetic Tree(s): OG_06_0001034_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g006320.2.1
Cluster	HCCA: Cluster_263

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00140970	evm_27.TU.AmTr_v1...	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana	0.04	Archaeplastida
AT3G11910	UBP13	ubiquitin-specific protease 13	0.07	Archaeplastida
AT5G06600	UBP12	ubiquitin-specific protease 12	0.03	Archaeplastida
Cpa\|evm.model.tig00000217.46	No alias	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.04	Archaeplastida
Cpa\|evm.model.tig00021350.30	No alias	Protein degradation.peptidase families.cysteine-type...	0.02	Archaeplastida
GSVIVT01022498001	No alias	Protein degradation.peptidase families.cysteine-type...	0.09	Archaeplastida
GSVIVT01034603001	No alias	Protein degradation.peptidase families.cysteine-type...	0.06	Archaeplastida
Gb_02820	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	Archaeplastida
Gb_04866	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	Archaeplastida
LOC_Os01g56490.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	Archaeplastida
LOC_Os07g06950.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	Archaeplastida
LOC_Os11g36470.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	Archaeplastida
LOC_Os12g30540.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	Archaeplastida
MA_10426331g0010	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	Archaeplastida
MA_10427483g0020	No alias	deubiquitinase (UBP12-13)	0.04	Archaeplastida
MA_10428769g0010	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.07	Archaeplastida
MA_75085g0010	No alias	deubiquitinase (UBP12-13)	0.03	Archaeplastida
Mp3g15430.1	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	Archaeplastida
Pp3c11_18780V3.1	No alias	ubiquitin-specific protease 12	0.04	Archaeplastida
Pp3c15_15710V3.1	No alias	ubiquitin-specific protease 12	0.04	Archaeplastida
Smo444302	No alias	Protein degradation.peptidase families.cysteine-type...	0.05	Archaeplastida
Zm00001e017788_P001	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.05	Archaeplastida
Zm00001e019687_P003	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	Archaeplastida
Zm00001e032871_P004	No alias	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein-specific protease activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	ubiquitinyl hydrolase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	IEP	Neighborhood
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Neighborhood
BP	GO:0002097	tRNA wobble base modification	IEP	Neighborhood
BP	GO:0002098	tRNA wobble uridine modification	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0004402	histone acetyltransferase activity	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006401	RNA catabolic process	IEP	Neighborhood
BP	GO:0006402	mRNA catabolic process	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
BP	GO:0006475	internal protein amino acid acetylation	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006612	protein targeting to membrane	IEP	Neighborhood
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Neighborhood
BP	GO:0006813	potassium ion transport	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
MF	GO:0008312	7S RNA binding	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
BP	GO:0009056	catabolic process	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
BP	GO:0009892	negative regulation of metabolic process	IEP	Neighborhood
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
BP	GO:0016197	endosomal transport	IEP	Neighborhood
BP	GO:0016482	cytosolic transport	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016573	histone acetylation	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
BP	GO:0018393	internal peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0018394	peptidyl-lysine acetylation	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030127	COPII vesicle coat	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
CC	GO:0033588	Elongator holoenzyme complex	IEP	Neighborhood
MF	GO:0034212	peptide N-acetyltransferase activity	IEP	Neighborhood
MF	GO:0034450	ubiquitin-ubiquitin ligase activity	IEP	Neighborhood
BP	GO:0034613	cellular protein localization	IEP	Neighborhood
MF	GO:0035091	phosphatidylinositol binding	IEP	Neighborhood
BP	GO:0042147	retrograde transport, endosome to Golgi	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
BP	GO:0043543	protein acylation	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0044248	cellular catabolic process	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045047	protein targeting to ER	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0048193	Golgi vesicle transport	IEP	Neighborhood
CC	GO:0048500	signal recognition particle	IEP	Neighborhood
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
MF	GO:0061630	ubiquitin protein ligase activity	IEP	Neighborhood
MF	GO:0061659	ubiquitin-like protein ligase activity	IEP	Neighborhood
MF	GO:0061733	peptide-lysine-N-acetyltransferase activity	IEP	Neighborhood
BP	GO:0070727	cellular macromolecule localization	IEP	Neighborhood
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0071804	cellular potassium ion transport	IEP	Neighborhood
BP	GO:0071805	potassium ion transmembrane transport	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Neighborhood
BP	GO:0072657	protein localization to membrane	IEP	Neighborhood
BP	GO:0090150	establishment of protein localization to membrane	IEP	Neighborhood
BP	GO:1901575	organic substance catabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	198	519
IPR024729	USP7_ICP0-binding_dom	623	875
IPR029346	USP_C	885	1094
IPR002083	MATH/TRAF_dom	60	180

External Links

No external refs found!

Solyc11g006320.2.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation