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  5. AMTR_s00032p00019980

AMTR_s00032p00019980 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.4

Description : RNA processing.RNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).splicing factor 3B complex.SF3B6 component


Gene families : OG0004911 (Archaeplastida) Phylogenetic Tree(s): OG0004911_tree ,
OG_05_0006341 (LandPlants) Phylogenetic Tree(s): OG_05_0006341_tree ,
OG_06_0006898 (SeedPlants) Phylogenetic Tree(s): OG_06_0006898_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00019980
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000912.24 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Gb_21702 No alias component SF3B6 of splicing factor 3B complex 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Neighborhood
CC GO:0000445 THO complex part of transcription export complex IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006081 cellular aldehyde metabolic process IEP Neighborhood
BP GO:0006098 pentose-phosphate shunt IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006739 NADP metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0051156 glucose 6-phosphate metabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 21 87
No external refs found!