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  5. Solyc11g008470.2.1

Solyc11g008470.2.1


Description : SART-1 family protein DOT2 OS=Arabidopsis thaliana (sp|q9lfe0|dot2_arath : 378.0)


Gene families : OG0003313 (Archaeplastida) Phylogenetic Tree(s): OG0003313_tree ,
OG_05_0006425 (LandPlants) Phylogenetic Tree(s): OG_05_0006425_tree ,
OG_06_0008464 (SeedPlants) Phylogenetic Tree(s): OG_06_0008464_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g008470.2.1
Cluster HCCA: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00092p00135160 evm_27.TU.AmTr_v1... SART-1 family protein DOT2 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT5G16780 MDF, DOT2 SART-1 family 0.07 Archaeplastida
Cpa|evm.model.tig00000471.16 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre03.g156100 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01035173001 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana 0.05 Archaeplastida
Gb_00217 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_12198 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g30730.2 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana... 0.1 Archaeplastida
Mp8g09130.1 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Pp3c15_10170V3.1 No alias SART-1 family 0.03 Archaeplastida
Smo404232 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana 0.05 Archaeplastida
Zm00001e018582_P001 No alias SART-1 family protein DOT2 OS=Arabidopsis thaliana... 0.16 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
BP GO:0043044 ATP-dependent chromatin remodeling IEP Neighborhood
BP GO:0043486 histone exchange IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
InterPro domains Description Start Stop
IPR005011 SNU66/SART1 13 347
IPR005011 SNU66/SART1 357 407
No external refs found!